RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miRN2237b	PmiREN	Chr10	10807210	10807231	-	Y/N
Osa-miRN2294	PmiREN	Chr9	9174506	9174526	+	N/Y
Osa-miRN2291	PmiREN	Chr9	8969545	8969565	+	Y/Y
Osa-miRN2290	PmiREN	Chr8	10061176	10061196	-	N/Y
Osa-miRN2205	PmiREN	Chr5	3877018	3877038	+	Y/N
Osa-miRN2292	PmiREN	Chr11	9840141	9840161	+	N/N
Osa-miR9777	PmiREN	Chr2	1797977	1797998	-	Y/N
Osa-miRN2369	PmiREN	Chr12	14944232	14944252	+	N/Y
Osa-miRN2368	PmiREN	Chr11	23042124	23042144	-	N/N
Osa-miRN2365	PmiREN	Chr7	6687478	6687498	+	N/N
Osa-miRN2367	PmiREN	Chr7	5730366	5730386	+	N/N
Osa-miRN2366	PmiREN	Chr7	15967943	15967963	-	N/Y
Osa-miRN2361	PmiREN	Chr4	12965130	12965150	+	N/N
Osa-miRN2360	PmiREN	Chr4	17717355	17717375	+	N/N
Osa-miRN2363	PmiREN	Chr6	24709936	24709956	+	N/Y
Osa-miRN2362	PmiREN	Chr5	24797708	24797728	+	Y/N
Osa-miRN2285d	PmiREN	Chr11	6974869	6974888	-	Y/Y
Osa-miRN2285e	PmiREN	Chr4	598059	598078	+	Y/Y
Osa-miRN2285f	PmiREN	Chr6	23376294	23376313	-	Y/Y
Osa-miRN2285a	PmiREN	Chr10	17481035	17481054	+	Y/Y
Osa-miR5536	PmiREN	Chr2	19457533	19457553	+	N/N
Osa-miRN2228a	PmiREN	Chr4	4926830	4926850	-	N/Y
Osa-miRN2281a	PmiREN	Chr4	16545760	16545780	+	Y/N
Osa-miRN2229b	PmiREN	Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN	Chr8	705385	705405	+	Y/Y
Osa-miRN2229a	PmiREN	Chr5	7377922	7377942	-	Y/Y
Osa-miRN2281b	PmiREN	Chr8	3513112	3513132	+	Y/N
Osa-miRN2318	PmiREN	Chr12	7555497	7555517	+	N/N
Osa-miRN01	RiceNCexp	Chr1	2068759	2068778	-	N/N
Osa-miRN02	RiceNCexp	Chr1	2309154	2309173	-	Y/N
Osa-miRN03	RiceNCexp	Chr1	2309230	2309250	-	Y/Y
Osa-miRN04	RiceNCexp	Chr1	4766346	4766366	-	Y/N
Osa-miRN05	RiceNCexp	Chr1	4766347	4766367	-	Y/N
Osa-miRN06	RiceNCexp	Chr1	4766354	4766373	-	N/N
Osa-miRN07	RiceNCexp	Chr1	4766362	4766382	-	N/N
Osa-miRN08	RiceNCexp	Chr1	4766513	4766533	-	N/N
Osa-miRN09	RiceNCexp	Chr1	11666844	11666864	-	Y/Y
Osa-miRN10	RiceNCexp	Chr1	11667021	11667041	-	N/N
Osa-miRN11	RiceNCexp	Chr1	11667043	11667064	-	N/N
Osa-miRN12	RiceNCexp	Chr1	11667044	11667064	-	N/N
Osa-miRN13	RiceNCexp	Chr1	12301814	12301833	+	Y/N
Osa-miRN14	RiceNCexp	Chr1	14130486	14130507	+	N/N
Osa-miRN15	RiceNCexp	Chr1	18049428	18049448	+	N/N
Osa-miRN16	RiceNCexp	Chr1	22524220	22524239	-	Y/N
Osa-miRN17	RiceNCexp	Chr1	39048236	39048255	+	N/N
Osa-miRN18	RiceNCexp	Chr1	41260752	41260771	-	Y/N
Osa-miRN19	RiceNCexp	Chr2	4345573	4345594	+	N/N
Osa-miRN20	RiceNCexp	Chr2	18307627	18307646	-	N/N
Osa-miRN21	RiceNCexp	Chr2	18942099	18942118	-	N/N
Osa-miRN22	RiceNCexp	Chr2	24120061	24120081	-	Y/Y