RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR167d	PmiREN	Chr7	4166373	4166394	-	Y/N
Osa-miR167j	PmiREN	Chr1	32686181	32686202	-	Y/N
Osa-miR167h	PmiREN	Chr12	25480628	25480649	+	Y/N
Osa-miR395a	PmiREN	Chr4	31805504	31805523	-	Y/N
Osa-miR395b	PmiREN	Chr4	31805343	31805363	-	Y/N
Osa-miR395c	PmiREN	Chr4	31805203	31805224	-	Y/N
Osa-miR395e	PmiREN	Chr4	31804922	31804943	-	Y/N
Osa-miR395f	PmiREN	Chr8	3299895	3299915	+	Y/N
Osa-miR395g	PmiREN	Chr4	31804642	31804662	-	Y/N
Osa-miR395h	PmiREN	Chr8	3299226	3299246	+	Y/N
Osa-miR395j	PmiREN	Chr8	3299560	3299581	+	Y/N
Osa-miR395l	PmiREN	Chr8	3300071	3300091	+	Y/N
Osa-miR395m	PmiREN	Chr4	32622093	32622113	+	Y/N
Osa-miR395o	PmiREN	Chr4	32622429	32622450	+	N/N
Osa-miR11337h	PmiREN	Chr1	29451486	29451506	-	Y/N
Osa-miRN2364	PmiREN	Chr6	28324494	28324514	+	N/Y
Osa-miR5795c	PmiREN	Chr4	11400635	11400656	-	Y/N
Osa-miR11337i	PmiREN	Chr2	32851465	32851485	-	Y/N
Osa-miRN2256	PmiREN	Chr4	20988745	20988765	+	N/Y
Osa-miR11337j	PmiREN	Chr3	32923087	32923107	+	Y/N
Osa-miRN2310	PmiREN	Chr8	17848878	17848899	-	Y/N
Osa-miR11337k	PmiREN	Chr3	4737493	4737513	-	Y/N
Osa-miRN2311	PmiREN	Chr6	992257	992278	+	Y/N
Osa-miRN2312	PmiREN	Chr6	24608747	24608767	-	Y/Y
Osa-miR11337m	PmiREN	Chr5	22461929	22461949	+	Y/N
Osa-miR1428d	PmiREN	Chr3	23077370	23077392	+	N/N
Osa-miR1428c	PmiREN	Chr2	2535131	2535153	+	N/N
Osa-miR1428b	PmiREN	Chr7	18161294	18161315	+	Y/N
Osa-miR1428a	PmiREN	Chr1	13160785	13160806	+	Y/N
Osa-miR5809a	PmiREN	Chr3	7799985	7800005	+	Y/N
Osa-miRN221d	PmiREN	Chr10	10858115	10858134	-	Y/N
Osa-miR5819c	PmiREN	Chr6	8845536	8845556	+	N/N
Osa-miR11337o	PmiREN	Chr7	1830200	1830220	-	Y/N
Osa-miRN2315	PmiREN	Chr11	16391272	16391292	+	N/Y
Osa-miRN221e	PmiREN	Chr6	23591716	23591735	+	Y/N
Osa-miR5819a	PmiREN	Chr1	29695852	29695872	+	N/N
Osa-miR11337a	PmiREN	Chr8	1665252	1665273	-	Y/N
Osa-miR11337b	PmiREN	Chr12	7127106	7127126	+	Y/N
Osa-miRN2322	PmiREN	Chr2	12296437	12296457	+	N/Y
Osa-miR11337c	PmiREN	Chr1	42763684	42763704	+	Y/N
Osa-miRN2230	PmiREN	Chr9	13753101	13753122	+	Y/N
Osa-miR11341	PmiREN	Chr9	22895230	22895251	-	Y/N
Osa-miR11337d	PmiREN	Chr5	24705913	24705933	+	Y/N
Osa-miR170	PmiREN	Chr3	21191693	21191713	+	Y/N
Osa-miRN2373a	PmiREN	Chr1	32966906	32966926	-	N/N
Osa-miRN2330	PmiREN	Chr9	9298242	9298262	+	N/Y
Osa-miRN2373d	PmiREN	Chr9	11323120	11323140	+	N/N
Osa-miR11337e	PmiREN	Chr10	17680744	17680764	-	Y/N
Osa-miR11337f	PmiREN	Chr10	6253608	6253628	-	N/N
Osa-miR10519	PmiREN	Chr2	21239830	21239853	-	Y/N
Osa-miRN2267c	PmiREN	Chr1	28420010	28420030	-	N/Y
Osa-miR5151	PmiREN	Chr5	3661607	3661627	-	Y/N
Osa-miR1130	PmiREN	Chr3	24748148	24748167	+	N/N
Osa-miRN2331	PmiREN	Chr9	9324615	9324635	+	N/Y
Osa-miRN2267d	PmiREN	Chr6	11137339	11137359	+	N/Y
Osa-miRN2308	PmiREN	Chr9	8761068	8761088	+	N/Y
Osa-miR820a	PmiREN	Chr1	14130483	14130504	+	Y/N
Osa-miRN2267a	PmiREN	Chr10	11705913	11705933	+	N/Y
Osa-miR820c	PmiREN	Chr10	6928685	6928708	+	Y/N
Osa-miR820b	PmiREN	Chr7	13120702	13120725	-	Y/N
Osa-miRN2302	PmiREN	Chr5	8249359	8249379	+	N/Y
Osa-miRN2301	PmiREN	Chr1	11883749	11883769	-	N/Y
Osa-miRN2300	PmiREN	Chr1	34289922	34289942	+	Y/Y
Osa-miRN2307	PmiREN	Chr8	17084861	17084881	+	N/Y
Osa-miRN2306	PmiREN	Chr8	1202343	1202363	+	N/Y
Osa-miRN2305	PmiREN	Chr7	6722807	6722827	-	N/Y
Osa-miRN2304	PmiREN	Chr6	24723463	24723483	-	Y/Y
Osa-miRN2328	PmiREN	Chr6	9669276	9669296	-	Y/Y
Osa-miR1850	PmiREN	Chr5	26275302	26275322	-	Y/N
Osa-miR5512	PmiREN	Chr4	18386989	18387009	-	Y/N
Osa-miRN45b	PmiREN	Chr9	11946580	11946599	-	Y/N
Osa-miRN2283c	PmiREN	Chr11	3821417	3821437	+	Y/N
Osa-miRN2288	PmiREN	Chr2	1523682	1523702	+	N/Y