Chr:
Chr7
Start:
1830200
End:
1830220
Strand:
-
Sequence:
UACCUCGUUAGAUUCGUCUCA
Length:
21
precursor sequence:
AACCCCUAGGCUAUUUUGCGAGACGAAUCUAAUGAUGUAUAUUAAUCCAUGAUUAGCGACUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAUUAUACCUCGUUAGAUUCGUCUCACAAAAUAGCCUAAGGGUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
26
NEP:
9.49%
LE_num:
LEP:
12.04%
ME_num:
MEP:
76.28%
HE_num:
HEP:
2.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.80
Avg Expression:
7.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.1629149105433 | 0.0362423304285881 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -1.52576226589255 | 8.91832362516329e-05 |