Chr:
Chr9
Start:
13753101
End:
13753122
Strand:
+
Sequence:
UUUUCCGCGUCCAACUUUGACC
Length:
22
precursor sequence:
CAUUAUAAGUGCAGCCAUGGUUUUCCGCGUCCAACUUUGACCGUCCGUCUUAUUUGAAAAUUUUUUGAAAAAAUUUAAAAACAUAAGUCACGAGUAAAGUACUAUUCAUGUUUUAUCAUCUCAUAACAACGAAAAUACUAACUAUAAAAAAAUUUCAAAUAAGACGAACGAUCAAAGUUGGACGUGGAAACUUAUGGUUGCACUUAUAAUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
5
NEP:
1.82%
LE_num:
LEP:
3.28%
ME_num:
MEP:
82.12%
HE_num:
HEP:
12.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.81
Avg Expression:
12.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -1.95289151154189 | 0.0448482567122255 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.24002931359643 | 0.0267880791514048 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.60308566365339 | 4.3957555358801e-18 |