RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR5160	miRbase		Chr12	2039483	2039504	-	N/N
Osa-miR5161	miRbase/PmiREN	/	Chr12	12083796	12083817	+	N/N
osa-miR5162	miRbase		Chr12	16421208	16421231	+	N/N
Osa-miR5337a	miRbase/PmiREN	/	Chr4	5621974	5621994	+	N/N
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
osa-miR5339	miRbase		Chr6	29362783	29362803	-	N/N
osa-miR5340	miRbase		Chr2	5683388	5683410	-	Y/N
osa-miR5484	miRbase		Chr2	7796932	7796952	-	Y/N
osa-miR5485	miRbase		Chr3	22088162	22088182	-	N/N
Osa-miR5486	miRbase/PmiREN	/	Chr3	26838901	26838921	+	Y/N
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5491	miRbase/PmiREN	/	Chr9	6896428	6896448	+	N/N
Osa-miR5492	miRbase/PmiREN	/	Chr6	16973826	16973846	+	N/N
osa-miR5493	miRbase		Chr2	22898270	22898290	+	Y/N
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
Osa-miR5495	miRbase/PmiREN	/	Chr2	20298341	20298363	+	N/N
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
osa-miR5498	miRbase		Chr4	11830808	11830828	-	N/N
Osa-miR5499	miRbase/PmiREN	/	Chr4	17241810	17241832	+	N/N
osa-miR5500	miRbase		Chr4	27731077	27731098	+	N/N
osa-miR5501	miRbase		Chr4	28838215	28838235	+	N/N
osa-miR5502	miRbase		Chr5	28979946	28979967	-	N/N
Osa-miR5503	miRbase/PmiREN	/	Chr12	5657913	5657934	+	N/N
osa-miR5504	miRbase		Chr10	17228177	17228197	-	Y/N
Osa-miR5505	miRbase/PmiREN	/	Chr12	13389180	13389203	+	N/N
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
Osa-miR5508	miRbase/PmiREN	/	Chr6	638325	638345	-	Y/N
osa-miR5509	miRbase		Chr11	24258785	24258805	-	Y/Y
osa-miR5510	miRbase		Chr12	19128008	19128028	-	N/N
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5512a	miRbase		Chr4	18387082	18387102	+	Y/N
Osa-miR5513	miRbase/PmiREN	/	Chr3	34008118	34008138	+	Y/N
osa-miR2275c	miRbase		Chr7	16719848	16719870	-	Y/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
osa-miR5515	miRbase		Chr4	17244231	17244251	+	Y/Y
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR5517	miRbase/PmiREN	/	Chr6	24618693	24618715	-	N/N
osa-miR5518	miRbase		Chr7	9526436	9526456	+	N/N
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
osa-miR5522	miRbase		Chr4	21650334	21650354	+	N/N
osa-miR5523	miRbase		Chr4	18205684	18205705	-	Y/N
osa-miR2275d	miRbase		Chr8	3736826	3736847	-	Y/Y
osa-miR5524	miRbase		Chr9	3278307	3278327	+	N/N
osa-miR5525	miRbase		Chr9	3904488	3904509	-	Y/N