RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR531c	PmiREN	Chr11	26930692	26930713	+	Y/N
Osa-miR531d	PmiREN	Chr2	18431799	18431820	+	Y/N
Osa-miR2275j	PmiREN	Chr8	3736692	3736712	-	Y/Y
Osa-miR11337n	PmiREN	Chr7	19603623	19603643	+	Y/N
Osa-miR398	PmiREN	Chr7	14598627	14598647	-	Y/Y
Osa-miR399d	PmiREN	Chr6	1561791	1561812	+	Y/N
Osa-miR399l	PmiREN	Chr6	20890950	20890970	+	Y/Y
Osa-miR399j	PmiREN	Chr4	28873196	28873215	+	Y/N
Osa-miRN2347	PmiREN	Chr6	4789408	4789428	+	N/N
Osa-miRN2346	PmiREN	Chr5	6099540	6099560	+	N/Y
Osa-miRN2345	PmiREN	Chr4	21226048	21226068	-	N/Y
Osa-miRN2344	PmiREN	Chr3	27635975	27635995	+	N/N
Osa-miRN2343	PmiREN	Chr3	26841668	26841688	+	N/Y
Osa-miRN2342	PmiREN	Chr2	18533094	18533114	+	N/N
Osa-miRN2341	PmiREN	Chr2	12299897	12299917	+	N/N
Osa-miRN2340	PmiREN	Chr1	13885903	13885923	-	N/Y
Osa-miR418	PmiREN	Chr2	35182640	35182663	-	N/N
Osa-miRN2349	PmiREN	Chr9	6623796	6623816	+	N/Y
Osa-miRN2348	PmiREN	Chr7	17339271	17339291	-	N/N
Osa-miR164d	PmiREN	Chr2	33143631	33143650	-	Y/N
Osa-miR159d	PmiREN	Chr1	6563767	6563786	-	Y/Y
Osa-miR159e	PmiREN	Chr1	9760719	9760738	-	Y/Y
Osa-miR159c	PmiREN	Chr1	6556059	6556078	-	Y/Y
Osa-miR159a	PmiREN	Chr1	6693269	6693288	+	Y/N
Osa-miR5821a	PmiREN	Chr12	24605434	24605454	+	N/N
Osa-miR5821b	PmiREN	Chr6	21881275	21881295	+	N/N
Osa-miRN2357	PmiREN	Chr3	32294553	32294573	+	N/N
Osa-miRN2350	PmiREN	Chr11	24771256	24771276	+	N/N
Osa-miRN2353	PmiREN	Chr12	18625651	18625671	+	N/N
Osa-miRN2269	PmiREN	Chr1	4397489	4397508	+	N/N
Osa-miRN2261	PmiREN	Chr5	20173002	20173022	-	Y/N
Osa-miRN2262	PmiREN	Chr2	31449188	31449207	+	Y/N
Osa-miRN2263	PmiREN	Chr12	2361885	2361905	+	Y/N
Osa-miRN2264	PmiREN	Chr9	13604993	13605013	+	N/Y
Osa-miR1846a	PmiREN	Chr10	529306	529329	+	Y/N
Osa-miRN2266	PmiREN	Chr2	720919	720939	+	Y/N
Osa-miR5799	PmiREN	Chr1	3400995	3401018	-	N/N
Osa-miRN2358	PmiREN	Chr3	32278135	32278155	-	N/Y
Osa-miRN2359	PmiREN	Chr4	13137356	13137376	-	N/Y
Osa-miR156m	PmiREN	Chr8	21491234	21491254	+	Y/Y
Osa-miRN2265	PmiREN	Chr11	11438936	11438957	+	N/N
Osa-miR9664	PmiREN	Chr11	7342344	7342364	-	Y/N
Osa-miR1869	PmiREN	Chr4	21644960	21644982	+	N/N
Osa-miRN2337	PmiREN	Chr12	21000978	21000998	+	N/Y
Osa-miR1863	PmiREN	Chr12	4869464	4869489	+	Y/Y
Osa-miR1865	PmiREN	Chr3	34000705	34000726	+	Y/N
Osa-miRN2373b	PmiREN	Chr5	27494437	27494457	+	N/N
Osa-miR167g	PmiREN	Chr3	3347692	3347713	+	Y/N
Osa-miR167f	PmiREN	Chr10	14723125	14723146	-	Y/N
Osa-miR167d	PmiREN	Chr7	4166373	4166394	-	Y/N