RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR1426	miRbase		Chr1	7189323	7189343	-	N/N
Osa-miR1427	miRbase/PmiREN	/	Chr8	9192766	9192786	+	Y/N
osa-miR1428a-5p	miRbase		Chr1	13160785	13160805	+	Y/N
osa-miR1428a-3p	miRbase		Chr1	13160865	13160885	+	N/N
osa-miR1429-5p	miRbase		Chr8	2037052	2037072	-	N/Y
osa-miR1429-3p	miRbase		Chr8	2036954	2036974	-	Y/N
osa-miR1430	miRbase		Chr12	6825025	6825045	-	Y/Y
Osa-miR1431	miRbase/PmiREN	/	Chr1	4766355	4766375	-	Y/Y
osa-miR1432-5p	miRbase		Chr7	23401784	23401804	-	Y/Y
osa-miR1432-3p	miRbase		Chr7	23401707	23401727	-	Y/Y
osa-miR169r-5p	miRbase		Chr3	35782429	35782449	+	Y/N
osa-miR169r-3p	miRbase		Chr3	35782501	35782521	+	Y/N
osa-miR444b.2	miRbase		none	none	none	none	Y/N
osa-miR444b.1	miRbase		none	none	none	none	Y/N
osa-miR444c.2	miRbase		none	none	none	none	Y/N
osa-miR444c.1	miRbase		none	none	none	none	Y/N
osa-miR444d.3	miRbase		none	none	none	none	Y/N
osa-miR444d.2	miRbase		none	none	none	none	Y/N
osa-miR444d.1	miRbase		none	none	none	none	N/N
Osa-miR444e	miRbase/PmiREN	/	Chr8	20884829	20884851	+	Y/N
osa-miR444f	miRbase		none	none	none	none	N/N
osa-miR810b.1	miRbase		Chr11	959633	959653	-	Y/N
osa-miR810b.2	miRbase		Chr11	959609	959629	-	Y/Y
osa-miR1435	miRbase		Chr1	29289440	29289459	-	N/N
osa-miR1436	miRbase		Chr1	20316606	20316626	-	Y/N
osa-miR1437a	miRbase		Chr8	3956048	3956069	+	Y/N
osa-miR1438	miRbase		Chr10	8429630	8429651	+	N/N
osa-miR1440a	miRbase		Chr9	5980666	5980685	-	N/N
osa-miR1441	miRbase		Chr12	19485761	19485781	-	N/N
osa-miR1442	miRbase		Chr7	27589077	27589096	+	N/N
osa-miR1439	miRbase		Chr12	10074240	10074260	+	N/N
osa-miR531b	miRbase		Chr1	833970	833989	-	Y/N
Osa-miR1846d	miRbase/PmiREN	/	Chr1	39637075	39637096	+	Y/N
osa-miR1846d-3p	miRbase		Chr1	39637151	39637170	+	Y/Y
osa-miR1847.1	miRbase		Chr1	20332894	20332914	+	Y/N
osa-miR1847.2	miRbase		Chr1	20332937	20332960	+	N/N
osa-miR1848	miRbase		Chr4	18131817	18131837	+	N/N
osa-miR1849	miRbase		Chr4	22224878	22224898	+	Y/N
osa-miR1850.1	miRbase		Chr5	26275302	26275322	-	Y/N
osa-miR1850.2	miRbase		Chr5	26275277	26275297	-	Y/N
osa-miR1850.3	miRbase		Chr5	26275246	26275267	-	Y/N
osa-miR1851	miRbase		Chr5	26049753	26049773	+	Y/N
Osa-miR1852	miRbase/PmiREN	/	Chr5	20761126	20761148	+	N/N
osa-miR1853-5p	miRbase		Chr8	3689146	3689169	-	N/N
osa-miR1853-3p	miRbase		Chr8	3689101	3689122	-	N/N
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
osa-miR1854-3p	miRbase		Chr8	7858374	7858395	-	N/N
osa-miR1855	miRbase		Chr11	21709050	21709070	+	N/N
Osa-miR1856	miRbase/PmiREN	/	Chr11	10376266	10376286	-	Y/Y
osa-miR1857-5p	miRbase		Chr11	2733912	2733932	+	N/N