RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR5795a	PmiREN	Chr9	11103946	11103967	-	Y/N
Osa-miRN2376	PmiREN	Chr5	13976622	13976642	+	N/Y
Osa-miRN2377	PmiREN	Chr6	28293791	28293811	+	N/Y
Osa-miRN2374	PmiREN	Chr3	26834061	26834081	+	N/N
Osa-miRN2375	PmiREN	Chr4	17474475	17474495	-	N/N
Osa-miR814	PmiREN	Chr11	6537593	6537612	+	Y/N
Osa-miR5795d	PmiREN	Chr7	7703345	7703366	+	Y/N
Osa-miR11339f	PmiREN	Chr9	7974442	7974462	-	N/N
Osa-miR11339g	PmiREN	Chr9	7233194	7233214	-	N/N
Osa-miR11339d	PmiREN	Chr6	9408438	9408458	-	N/N
Osa-miR11339e	PmiREN	Chr6	6835136	6835156	+	N/N
Osa-miR11339b	PmiREN	Chr6	30763690	30763710	-	N/N
Osa-miR11339c	PmiREN	Chr6	21843016	21843036	-	N/N
Osa-miR11339a	PmiREN	Chr8	10041686	10041706	+	Y/N
Osa-miR11339n	PmiREN	Chr9	8881628	8881648	-	N/N
Osa-miR11339o	PmiREN	Chr9	915192	915212	-	N/N
Osa-miR11339l	PmiREN	Chr1	29242336	29242356	+	N/N
Osa-miR11339m	PmiREN	Chr8	26541373	26541393	+	N/N
Osa-miR5337b	PmiREN	Chr3	35885492	35885511	-	N/N
Osa-miR11339k	PmiREN	Chr5	176940	176963	+	N/N
Osa-miR11339h	PmiREN	Chr4	27611219	27611238	+	Y/N
Osa-miR11339v	PmiREN	Chr2	6014598	6014619	-	N/N
Osa-miR11339w	PmiREN	Chr3	11400500	11400521	-	N/N
Osa-miR11339t	PmiREN	Chr5	22998595	22998615	+	Y/N
Osa-miR11339u	PmiREN	Chr11	25244496	25244516	+	Y/N
Osa-miR11339r	PmiREN	Chr6	28992325	28992345	+	Y/N
Osa-miR11339s	PmiREN	Chr7	19380588	19380608	+	Y/N
Osa-miR11339p	PmiREN	Chr1	11324633	11324656	-	N/N
Osa-miR11339q	PmiREN	Chr12	16041754	16041774	-	Y/N
Osa-miR11339z	PmiREN	Chr6	8084212	8084233	+	N/N
Osa-miR11339x	PmiREN	Chr6	14421356	14421377	-	N/N
Osa-miR11339y	PmiREN	Chr6	12344123	12344144	-	N/N
Osa-miR439c	PmiREN	Chr1	18021796	18021817	+	Y/N
Osa-miR439b	PmiREN	Chr10	5572955	5572978	+	Y/N
Osa-miR439a	PmiREN	Chr7	8233877	8233900	+	N/N
Osa-miR439g	PmiREN	Chr8	3664278	3664301	+	N/N
Osa-miR439f	PmiREN	Chr9	16963079	16963102	+	N/N
Osa-miR439d	PmiREN	Chr6	1553137	1553160	-	N/N
Osa-miR5160	PmiREN	Chr7	23952866	23952889	-	Y/N
Osa-miR1862f	PmiREN	Chr3	29954038	29954057	+	N/Y
Osa-miR1862a	PmiREN	Chr5	1928707	1928726	+	Y/Y
Osa-miRN2273	PmiREN	Chr3	32487508	32487528	+	Y/Y
Osa-miRN2272	PmiREN	Chr12	22069226	22069246	-	N/Y
Osa-miRN2271	PmiREN	Chr4	18477956	18477977	+	Y/N
Osa-miRN2270	PmiREN	Chr10	10862757	10862776	+	Y/N
Osa-miRN2277	PmiREN	Chr9	6620328	6620348	+	N/N
Osa-miR1862h	PmiREN	Chr10	3413461	3413482	-	Y/N
Osa-miRN2275	PmiREN	Chr4	17660213	17660233	+	Y/Y
Osa-miRN2274	PmiREN	Chr6	9588773	9588793	+	N/Y
Osa-miR11339aa	PmiREN	Chr7	21696587	21696608	-	N/N