RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 117

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR1429-5p	miRbase		Chr8	2037052	2037072	-	N/Y
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
Osa-miR1857	miRbase/PmiREN	/	Chr11	2734001	2734021	+	N/Y
Osa-miR1870	miRbase/PmiREN	/	Chr6	21164798	21164821	+	N/Y
Osa-miR1882e	miRbase/PmiREN	/	Chr10	10320914	10320937	-	N/Y
osa-miR2101-3p	miRbase		Chr12	17986766	17986787	+	N/Y
Osa-miR2118a	miRbase/PmiREN	/	Chr4	21642950	21642971	-	N/Y
osa-miR2118i	miRbase		Chr4	21652426	21652447	-	N/Y
osa-miR2118l	miRbase		Chr4	21656743	21656764	-	N/Y
osa-miR2864.1	miRbase		Chr12	25664791	25664811	-	N/Y
Osa-miR2867	miRbase/PmiREN	/	Chr11	16277721	16277740	+	N/Y
osa-miR1862f	miRbase		none	none	none	none	N/Y
Osa-miR1862g	miRbase/PmiREN	/	Chr4	20340401	20340422	-	N/Y
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5791	miRbase		Chr12	24374520	24374540	+	N/Y
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5798	miRbase		Chr7	6672130	6672150	-	N/Y
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
osa-miR5818	miRbase		Chr4	13157349	13157369	+	N/Y
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miRN2351	PmiREN		Chr12	24395829	24395849	-	N/Y
Osa-miRN2321	PmiREN		Chr2	10642797	10642817	+	N/Y
Osa-miRN2320	PmiREN		Chr1	19145141	19145161	-	N/Y
Osa-miRN2327	PmiREN		Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN		Chr5	13984508	13984528	-	N/Y
Osa-miRN2335	PmiREN		Chr10	3687409	3687429	-	N/Y