RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Chromosome	Start	End	Strand	DE/TSE
osa-miR11339-5p	miRbase	Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase	Chr1	10371868	10371888	+	N/N
osa-miR11340-5p	miRbase	Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase	Chr6	7715459	7715482	+	Y/N
osa-miR11341-5p	miRbase	Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase	Chr9	22895229	22895252	+	Y/N
osa-miR11342-5p	miRbase	Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase	Chr11	23289311	23289332	-	N/N
osa-miR11343-5p	miRbase	Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase	Chr12	16169071	16169091	-	N/N
osa-miR11344-5p	miRbase	Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase	Chr10	21166714	21166734	+	N/N
osa-miR2120b-5p	miRbase	Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase	Chr1	1830288	1830307	+	N/N
osa-miR5801c-5p	miRbase	Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase	Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase	Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase	Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN	Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN	Chr6	28489798	28489818	+	Y/Y

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

osa-miR11339-5p

miRbase

Chr1