RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR444a-5p	miRbase		none	none	none	none	Y/Y
Osa-miR444a	miRbase/PmiREN	/	Chr8	20895018	20895040	+	Y/N
osa-miR444a-3p.1	miRbase		none	none	none	none	N/N
Osa-miR528	miRbase/PmiREN	/	Chr3	1667330	1667350	+	Y/N
osa-miR528-3p	miRbase		Chr3	1667395	1667415	+	Y/N
osa-miR529a	miRbase		Chr2	16227884	16227903	+	Y/N
osa-miR530-5p	miRbase		Chr4	8303665	8303684	-	Y/Y
osa-miR530-3p	miRbase		Chr4	8303546	8303566	-	Y/Y
osa-miR531a	miRbase		Chr8	1220398	1220421	-	Y/N
Osa-miR535	miRbase/PmiREN	/	Chr11	16290598	16290618	-	Y/N
osa-miR535-3p	miRbase		Chr11	16290533	16290553	-	Y/N
osa-miR395m	miRbase		Chr4	32622092	32622112	+	Y/N
Osa-miR395n	miRbase/PmiREN	/	Chr4	32622288	32622308	+	Y/N
osa-miR395o	miRbase		Chr4	32622429	32622449	+	N/N
Osa-miR395p	miRbase/PmiREN	/	Chr4	32622572	32622592	+	Y/N
osa-miR395q	miRbase		Chr4	32622715	32622735	+	Y/N
osa-miR395v	miRbase		Chr9	6606575	6606595	-	N/N
osa-miR395w	miRbase		Chr9	6606291	6606312	-	N/N
osa-miR395r	miRbase		none	none	none	none	Y/N
osa-miR810a	miRbase		none	none	none	none	Y/N

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

osa-miR444a-5p

miRbase

none