RiceNCexp:Browse

Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 0

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156a	miRbase/PmiREN	/	Chr1	22524221	22524240	-	Y/Y
Osa-miR156b	miRbase/PmiREN	/	Chr1	4666383	4666402	+	Y/Y
osa-miR156b-3p	miRbase		Chr1	4666450	4666470	+	Y/Y
Osa-miR156c	miRbase/PmiREN	/	Chr1	4666003	4666022	+	Y/Y
osa-miR156c-3p	miRbase		Chr1	4666074	4666095	+	Y/Y
osa-miR156d	miRbase		Chr2	4512974	4512993	-	Y/Y
Osa-miR156e	miRbase/PmiREN	/	Chr4	25026402	25026421	-	Y/Y
osa-miR156f-5p	miRbase		Chr8	21478233	21478252	+	Y/Y
osa-miR156f-3p	miRbase		Chr8	21478393	21478414	+	Y/N
Osa-miR156g	miRbase/PmiREN	/	Chr9	15065256	15065275	+	Y/Y
osa-miR156g-3p	miRbase		Chr9	15065346	15065367	+	Y/Y
osa-miR156h-5p	miRbase		Chr8	21491235	21491254	+	Y/Y
osa-miR156h-3p	miRbase		Chr8	21491395	21491416	+	Y/N
Osa-miR156i	miRbase/PmiREN	/	Chr2	24120063	24120082	-	Y/Y
osa-miR156j-5p	miRbase		Chr6	26554836	26554855	+	Y/Y
osa-miR156j-3p	miRbase		Chr6	26554902	26554923	+	N/N
Osa-miR160a	miRbase/PmiREN	/	Chr2	3511649	3511669	-	Y/N
osa-miR160a-3p	miRbase		Chr2	3511586	3511606	-	Y/N
Osa-miR160b	miRbase/PmiREN	/	Chr6	28081049	28081069	+	Y/N
osa-miR160b-3p	miRbase		Chr6	28081112	28081132	+	Y/N
OSA-LNC112939716	LOC112939716	Chr1	38317	39565	-	N/N
OSA-LNC107281753	LOC107281753	Chr1	101576	102684	-	N/N
OSA-PHAS4326467	LOC4326467	Chr1	137593	141558	+	Y/N
OSA-LNC112936174	LOC112936174	Chr1	163111	169478	+	Y/N
OSA-LNC107279520	LOC107279520	Chr1	171000	172079	+	Y/N
OSA-LNC107280189	LOC107280189	Chr1	303330	306444	-	Y/N
OSA-LNC107280387	LOC107280387	Chr1	403666	404719	-	Y/N
OSA-LNC107280385	LOC107280385	Chr1	404877	405848	+	Y/N
OSA-LNC112936901	LOC112936901	Chr1	537031	538361	-	Y/N
OSA-PHAS9269164	LOC9269164	Chr1	595520	597787	+	Y/N
OSA-LNC107279864	LOC107279864	Chr1	596068	596997	-	Y/N
OSA-LNC107281806	LOC107281806	Chr1	664497	664851	+	N/N
OSA-LNC107278096	LOC107278096	Chr1	685838	686818	+	Y/N
OSA-LNC107278804	LOC107278804	Chr1	715622	719437	-	Y/N
OSA-LNC112937438	LOC112937438	Chr1	719613	722857	+	Y/N
OSA-LNC107278390	LOC107278390	Chr1	748764	749578	-	Y/N
OSA-LNC107282088	LOC107282088	Chr1	781183	785596	-	Y/N
OSA-LNC4326111	LOC4326111	Chr1	792460	796511	-	Y/N
OSA-LNC9271150	LOC9271150	Chr1	804083	809495	-	N/N
OSA-LNC4326113	LOC4326113	Chr1	808993	810958	+	Y/N