RiceNCexp:Browse

phasiRNAs Basic Information

We used the phasiRNA analysis tool PhasiRNAnalyzer to predict the phasiRNA of 307 rice samples (including different tissues and treatments), and integrated the prediction results of the 355 samples to obtain the mature phasiRNAs.

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total numbers: 138

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Name	PHAS gene	Strand on PHAS gene	Start on PHAS gene	Gene	Chromosome	Strand	Annotation	DE/TSE
Osa-phasi01g0359	XR_001547319.2	-	445	LOC4326727	Chr1	-	uncharacterized LOC4326727	Y/N
Osa-phasi01g0368	XR_001547319.2	+	573	LOC4326727	Chr1	-	uncharacterized LOC4326727	Y/N
Osa-phasi01g0373	XR_001547319.2	-	655	LOC4326727	Chr1	-	uncharacterized LOC4326727	Y/N
Osa-phasi01g0399	XM_015780228.2	-	527	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X1	Y/N
Osa-phasi01g0404	XM_015780228.2	+	592	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X1	Y/N
Osa-phasi01g0411	XM_015780228.2	+	676	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X1	Y/N
Osa-phasi01g0414	XM_015780228.2	+	718	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X1	Y/N
Osa-phasi01g0432	XM_015780237.2	-	1486	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X2	Y/N
Osa-phasi01g0437	XM_015780237.2	+	1551	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X2	Y/N
Osa-phasi01g0444	XM_015780237.2	+	1635	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X2	Y/N
Osa-phasi01g0447	XM_015780237.2	+	1677	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X2	Y/N
Osa-phasi01g0465	XM_015780246.2	-	1481	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X3	Y/N
Osa-phasi01g0470	XM_015780246.2	+	1546	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X3	Y/N
Osa-phasi01g0477	XM_015780246.2	+	1630	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X3	Y/N
Osa-phasi01g0480	XM_015780246.2	+	1672	LOC4326495	Chr1	+	uncharacterized LOC4326495, transcript variant X3	Y/N
Osa-phasi01g0693	XM_015765986.2	-	833	LOC4324802	Chr1	+	laccase-7-like	Y/N
Osa-phasi02g0121	XM_015768498.2	-	1203	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X1	Y/N
Osa-phasi02g0122	XM_015768498.2	+	1205	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X1	Y/N
Osa-phasi02g0123	XM_015768498.2	+	1247	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X1	Y/N
Osa-phasi02g0124	XM_015768498.2	-	1350	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X1	Y/N
Osa-phasi02g0125	XM_015768499.2	-	1159	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X2	Y/N
Osa-phasi02g0126	XM_015768499.2	+	1161	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X2	Y/N
Osa-phasi02g0127	XM_015768499.2	+	1203	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X2	Y/N
Osa-phasi02g0128	XM_015768499.2	-	1306	LOC107276173	Chr2	-	calcineurin B-like protein 8, transcript variant X2	Y/N
Osa-phasi02g0401	XM_026023456.1	-	3549	LOC112937969	Chr2	-	DNA-directed RNA polymerase subunit beta-like, transcript variant X1	Y/N
Osa-phasi02g0403	XM_026023456.1	-	3570	LOC112937969	Chr2	-	DNA-directed RNA polymerase subunit beta-like, transcript variant X1	Y/N
Osa-phasi02g0422	XM_026023457.1	-	3549	LOC112937969	Chr2	-	DNA-directed RNA polymerase subunit beta-like, transcript variant X2	Y/N
Osa-phasi02g0424	XM_026023457.1	-	3570	LOC112937969	Chr2	-	DNA-directed RNA polymerase subunit beta-like, transcript variant X2	Y/N
Osa-phasi02g0532	XM_026023056.1	+	540	LOC9268084	Chr2	+	putative F-box protein PP2-B2	Y/N
Osa-phasi03g0002	XM_026023655.1	+	6605	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X1	Y/N
Osa-phasi03g0006	XR_001544381.2	+	6605	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X3	Y/N
Osa-phasi03g0010	XR_003241174.1	+	6605	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X2	Y/N
Osa-phasi03g0014	XR_003241175.1	+	6605	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X4	Y/N
Osa-phasi03g0018	XR_003241176.1	+	6484	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X5	Y/N
Osa-phasi03g0022	XR_003241177.1	+	5555	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X6	Y/N
Osa-phasi03g0026	XR_003241178.1	+	5468	LOC4331306	Chr3	+	uncharacterized LOC4331306, transcript variant X7	Y/N
Osa-phasi03g0083	XR_001544388.2	-	554	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0085	XR_001544388.2	+	556	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0088	XR_001544388.2	-	575	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0091	XR_001544388.2	+	577	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0109	XR_001544388.2	+	703	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0112	XR_001544388.2	-	722	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0114	XR_001544388.2	+	724	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0119	XR_001544388.2	+	745	LOC9267531	Chr3	+	uncharacterized LOC9267531	Y/N
Osa-phasi03g0139	XM_015772707.2	-	1059	LOC4333090	Chr3	-	protein ELF4-LIKE 3	Y/N
Osa-phasi03g0140	XM_015772707.2	+	1061	LOC4333090	Chr3	-	protein ELF4-LIKE 3	Y/N
Osa-phasi03g0141	XM_015772707.2	+	1082	LOC4333090	Chr3	-	protein ELF4-LIKE 3	Y/N
Osa-phasi03g0142	XM_015772707.2	-	1101	LOC4333090	Chr3	-	protein ELF4-LIKE 3	Y/N
Osa-phasi05g0022	XR_003242590.1	+	865	LOC112939092	Chr5	+	uncharacterized LOC112939092	Y/N
Osa-phasi05g0024	XR_003242590.1	-	905	LOC112939092	Chr5	+	uncharacterized LOC112939092	Y/N
Osa-phasi05g0027	XR_003242590.1	+	949	LOC112939092	Chr5	+	uncharacterized LOC112939092	Y/N
Osa-phasi05g0028	XR_003242590.1	-	968	LOC112939092	Chr5	+	uncharacterized LOC112939092	Y/N
Osa-phasi05g0029	XR_003242590.1	-	989	LOC112939092	Chr5	+	uncharacterized LOC112939092	Y/N
Osa-phasi05g0041	XR_003242641.1	+	484	LOC112939107	Chr5	+	uncharacterized LOC112939107	Y/N
Osa-phasi06g0288	XR_001546521.2	+	306	LOC9271748	Chr6	-	uncharacterized LOC9271748	Y/N
Osa-phasi06g0302	XR_001546521.2	+	516	LOC9271748	Chr6	-	uncharacterized LOC9271748	Y/N
Osa-phasi07g0074	XR_003243351.1	-	3200	LOC112939595	Chr7	-	uncharacterized LOC112939595	Y/N
Osa-phasi08g0174	XM_026019980.1	+	511	LOC107281942	Chr8	-	ethylene-responsive transcription factor ERF073	Y/N
Osa-phasi10g0110	XM_015757909.2	+	829	LOC4348527	Chr10	-	phosphoinositide phosphatase SAC2, transcript variant X1	Y/N
Osa-phasi10g0166	XM_015757910.2	+	828	LOC4348527	Chr10	-	phosphoinositide phosphatase SAC2, transcript variant X3	Y/N
Osa-phasi10g0222	XM_026020677.1	+	810	LOC4348527	Chr10	-	phosphoinositide phosphatase SAC2, transcript variant X2	Y/N
Osa-phasi12g1511	XM_026022265.1	+	1916	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1517	XM_026022265.1	-	1998	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1523	XM_026022265.1	-	2061	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1528	XM_026022265.1	+	2105	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1531	XM_026022265.1	-	2145	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1816	XM_015764839.2	+	688	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1818	XM_015764839.2	+	709	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1820	XM_015764839.2	+	730	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1822	XM_015764839.2	+	751	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1823	XM_015764839.2	+	752	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1824	XM_015764839.2	+	772	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1825	XM_015764839.2	+	773	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1826	XM_015764839.2	+	793	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1830	XM_015764839.2	+	835	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1839	XM_015764839.2	+	1566	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1843	XM_015764839.2	+	1588	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1846	XM_015764839.2	+	1608	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1850	XM_015764839.2	+	1629	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1851	XM_015764839.2	+	1630	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1855	XM_015764839.2	+	1651	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1860	XM_015764839.2	+	1672	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1863	XM_015764839.2	+	1692	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1867	XM_015764839.2	+	1714	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1879	XM_015764842.2	+	688	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1881	XM_015764842.2	+	709	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1883	XM_015764842.2	+	730	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1885	XM_015764842.2	+	751	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1886	XM_015764842.2	+	752	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1887	XM_015764842.2	+	772	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1888	XM_015764842.2	+	773	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1889	XM_015764842.2	+	793	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1893	XM_015764842.2	+	835	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1902	XM_015764842.2	+	1560	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1906	XM_015764842.2	+	1582	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1909	XM_015764842.2	+	1602	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1913	XM_015764842.2	+	1623	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1914	XM_015764842.2	+	1624	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1918	XM_015764842.2	+	1645	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1923	XM_015764842.2	+	1666	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1926	XM_015764842.2	+	1686	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1930	XM_015764842.2	+	1708	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1942	XM_015764845.2	+	688	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1944	XM_015764845.2	+	709	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1946	XM_015764845.2	+	730	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1948	XM_015764845.2	+	751	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1949	XM_015764845.2	+	752	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1950	XM_015764845.2	+	772	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1951	XM_015764845.2	+	773	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1952	XM_015764845.2	+	793	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1956	XM_015764845.2	+	835	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1965	XM_015764845.2	+	1542	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1969	XM_015764845.2	+	1564	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1972	XM_015764845.2	+	1584	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1976	XM_015764845.2	+	1605	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1977	XM_015764845.2	+	1606	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1981	XM_015764845.2	+	1627	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1986	XM_015764845.2	+	1648	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1989	XM_015764845.2	+	1668	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g1993	XM_015764845.2	+	1690	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X4	Y/N
Osa-phasi12g2005	XM_015764843.1	+	684	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2007	XM_015764843.1	+	705	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2009	XM_015764843.1	+	726	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2011	XM_015764843.1	+	747	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2012	XM_015764843.1	+	748	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2013	XM_015764843.1	+	768	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2014	XM_015764843.1	+	769	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2015	XM_015764843.1	+	789	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2019	XM_015764843.1	+	831	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2028	XM_015764843.1	+	1544	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2032	XM_015764843.1	+	1566	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2035	XM_015764843.1	+	1586	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2039	XM_015764843.1	+	1607	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2040	XM_015764843.1	+	1608	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2044	XM_015764843.1	+	1629	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2049	XM_015764843.1	+	1650	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2052	XM_015764843.1	+	1670	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N
Osa-phasi12g2056	XM_015764843.1	+	1692	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X3	Y/N