Source:
XM_026019980.1
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
511
Sequence:
AAGCCACACAGCAAAUAUGCAAGU
Length:
24
PHAS Gene Name:
LOC107281942
Chr:
Chr8
PHAS Transcript Annotation:
ethylene-responsive transcription factor ERF073
PHAS Transcript Sequence:
AGACCAUUCUAAAAAAUAUUUUUAAAUCUGGACCUUUUGGCCCGCACGUGGCCAAAUAACUCUGUCACGCCGCGUGCAGCGGGCAUGACAAUUUUAUCCUACCACGCCAGCGAGAGCGGCAUGGCCAGAUAACACUGUCAAGCCAACGACGCCGGCGUGGCCAAAUAACGCUAUCACUCCAGCGGGAGCGGCAUGUCACGCCCAGAAAUUCACUAGUAAUUUCCAAACUUAUUUGUGCAUUAAAUCCUCAUCCAGAAAUCAGCCGAGGUACACAAACUGACAAUUUAAUAUACAGAUUCAUCAAGUUAACUAAAACGAUAAAUACUUACAUAAGAGGCACUUAGUCCUCACCACGAAGAAAACUGCAGCGGAAAAUAAAAUCUAGCGAAGCUCCGGCUCCACUCCCACAGGCAGCUCAACUAGGGUAUAAGCCAAACAUCUUCUCCUUCGUAACUUUUCUUCAACUGAGGUUUGAUUGAUUAUUACAAGGUGAGUACAUGGAAUACUCCGCAAGCCACACAGCAAAUAUGCAAGUGCACAAGGAUACCAAAGGAUGACAUAAUAUAGGGCUCAUUUGCAAAAGCAGCAUUUAGCAAACAUUUAAGAAUUGUAAAACAGUAGAGUAAUUAAUCAUCAAUAUUAAUCAACACUGAACAGCACACCCAUGCUGCACAGGCCCAACCAUCCUGAACAACCAUACCCGGCUGUACAGAUCUAUCUCCAAACCAGGAAUAAACCAUUCAAAACCAGGAGCUAAUCAAAUUAUUACCAGUUAUAGCAUCAUUUAUUAUGAUGAAAAGUGUGAGACUAAUCACGAAAGACAUUGUUAGACCUGCCUAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUGGCCAGAGGUGUACCACUGUACCCACAAGACACGAUUCCACACAUGUUACCAUGCCCUGAAGUACCACCACGCCACUGCAAAGGGGGAAAUCGUGACAGUACCCUUCGCACAACACAACUCAAAGCAGUGCACCGUUCCUGGAUCAUAAUCACCCCCUUAUAAACACAAGGCAUGGACUCCCCAGCGACCCCCGUGGGCUUAUCUCCGCCACUUCUCAGUCUGGUGCCCCGCAAUGAACCAUGCUAUACAAAAGAUAAAGUUGUUGCCCAUACUGGCUUGUGGUUUGCACGGUUAAUGUUUCACAACCGAAACUCGUGAACCAGUCCUUAAUUGUCAUGAGCACGACCAGCAAAACCAUGUGCUCACAACCCACAUUUAUCAAGUUUUAGUUGGCAAAUUAAUUAAUUAACCAAUCAUGAUUAGCCAUCGUGAGCUACCAUUAUCAUGUCCAUCAUUAAGUAGUAGUGAAACAUUAGUUAUCCCAAUAGUGUGCUAAUGUUUCUAAGCAUGGCUAAGCAAUUAUAUCUAAUAUAUCUAGCUGAACCAAUAUAUAAAGCUCAACUAGUCAAAUUGUAACCCAAGGUAUCAAAGGACAGAGUAAUCAAUACAAAGUGGCCAUAACAAAGGUAUAGUUUCACACCAACCGGUGACAUUCGAAAAUAGACCUUUCCAAAAAAUAUUUUCAAAACUGAACCUGGCUGGCGUGGCAGUGUUGUUUGGCCACGCCAGCUACAGUGGCGUGUCAAGCUUUUUAUGUCACGCCACGCUCGCUGGCAUGGCCAAACAACACUACCACGCCAUGAACUCGUGGCGUGGCAAAGUUAUUUGGCCACGCUAGGCGGGAUGGCAUGGCCAAAAGGUUCAGAUCCUAAAAAUAUGUUUUGGGAAGGUCUAUUUUUAAAAUUAAAAAAAUAAAAAGGUUCAAAAAAUAAAAAAAAAGUUCCCAGUUUGGCUGGCCGGUUCAGAUCUGGGAAAUAAAUUUUGGAUGGGUUUAUUUUUAAAAUUAAAAAUUAAAAAGGUUCAUAAAAUAAAAAAAAUUCUUUCGCUGCCGAGCCAAGGGUGGCGCUCCCAUCGUAUUGUUGUUUGUCGUUGCCACCACAAGGUGAGAAAAAGGAUGCAGCCAGGUUUUUUUCCUGGACGUGAUCUUUGGUUCCUGUGAGCCAACCUAUCUGAUCGUGUUCUCGAGGUUCACAGGCAGGAAGAUCCAUUGGAUUGGUUUGAUUUGCAAUUUCUGUAACUUUACCUAUCAGUCUUACCAAGUAUAAUAUAUAAAUUAGCUCUGUGUUGCUGUUUGGAAAUAUUCAGAGAGUUUUUAUUGUGUUGGUAGCUAUUGGUACCGUGAAAGAGAGGGAUAAAUCAGGGCGCUUGCUGUAGAGUGCUCAUCAGAGAUUCACAUUCGCGGAGUUCUCUAAGGGUUCAAGUUAGGGAUAUUAGUGGUCACUUCAAAUCUAGAGAAGCUUAUAGGGAUGUUGAGUUGAAAAUAGGGCACCUCUUCCUAGGGCUUUGUUCGGUGAGGUUAGGGGUAAUCGAGACCCAGCUCGUUAGAGGUCCCCAAUGGAGAGUAGGAUUCAUAUGAUCCCAUGUCUCCCCUCUUAUGCAAAUCAAUGUAUUUCGUGUGAUUUCCUGCUUUGUGGUGCUAAUAUGUGUCCUCUGUGAGGUUGGCAAGUGUUGGGGUUCCUUGAGAAUCAAGACUUUGUCUCGUGAGGCAAGAACUCCAGAAGUUUUGGAAAAGAACCACUGAAGUACCGGGCAGACCUCUCUGUCUUCGGUUGAUAGCUGCCGAAAAAUUUCUGUCCCCCCCCUCUUCUAGGCUACACCUUGGAUUUCAGGUGCAGCUUCUGUACAUAAGAUUAUAAGUAUUAUGGAUGGCAAUGCAGGAAACAAUCAAAUUUUUAGGCUGAAGAAGAUACUCCGAAGACUGCUUUUAGAUGUUCUGGAGCAAUUGGCUUAUACGAGUGGGUUGUUAUGACUUUUUGGGUUAAGACUGCUGGUGCUACAUAUCAAAGAUCUAUGAAUUAUAUAUUCAUGAUCUCAUCGGCUUGUUGGGUGAAUCUAUAUAGAUGAUGUGAUUGUGACGUCUAAAAGUGUUGAUGGACACUUAGCUGAUUUAUGAAGGGUGUUAGAUAGGACAAGGAAUUCUAAAAAUAACUCCAUUUAUACGGCUCUUAAUCCAAUUUUCGCUAGCGAAGGCUAAAGAGGACCACAUGGAAAAAAACCGCCCUAUAUAUCAAAUAGCUCCGCACCAUCUCAACUUUCCCCACAUCCCAACUUCACGACUCCUUCUCUUCUCUCAAGCCGCUCCUCCCUCCUCCUCUCACCAUACAUCUUCACCUGUGGAGCGACAGCGAUGGCGACGAGGGCAAUGGGAGGCAGAUCUGAUGGUGGUAUGGGAGGAGGCUGGUCGCGGUGGCGCAAUAAAGAGUGUGGCGGCGGUGACCCUCCCACUCCCCUCUCCCAUAUCCAGCCUCCAGGUGCGUGCUCUCGACAAUAGCGGCUCCCUCCAGCCUCAACAUGCUCUCGGCAACGGCGUCCGUGGUGGCGAUGGGGGUCAAAUCUGGUGGCAGGAUGACCGGAGACCGUUGACGGUGGAAGUAGUAGAAGUGGCACUGACGGUGACUUCCCCACUCCCCUCCCAUCCUAUCCCUAUCCUAGAUCUGACCAUAGGGAGGCGGCCGCCGGUGGCGGUAGCUCGUCCACGGCGGCUUCAGCAGCCUCCAAGGUCAUCGUUGAUGACAAUGAGUAGUGUUGAUGUUUGCAUGUUUAAAAUGCAGUGAGAAAUCAAUGUAGUGAUCUUGGAUGUCAAUUUGAAUAUGGAUUGGAUUUGAAUCUAGCUUUCUAGACGUGGAUUUAAAAUUUGAAAAUGCAACAAUGUCUCUAGAUGUUGAUUUUUUUUUCCCAAAAGGAUAUCGCUGGCGGUCCUCUUAAUUAGUUGUGUCUCCUGCGAAAAUUGAUUUUGCAGGCGAUCUUCUUAAGUGUCUGCAAGCAAAAUUCUAUUAUCGCAAGUGGAUUUAAAUUUUCAUGGGUGAUCAUAUUAAGUGGUCGUAAGCAAAAAUCUAUUAUCGCAACCAUGAACAAAAAUCUAUUGCCGGCUAGUAGUACCGCCAGCGAAAAUCGGUUUAGGCCACCAUGAAGAACACUCUUUUAAGUAGUGAUUAGGAGUUUGUAUUAAGGAAGCUCUUCGAGUCAUGCAUCGAGAGAAUUUUAGUCCCGUGAAAUUUCCUCCUCACUCGUAUCGUAAAACUUCCUCCCUAAUUUCAUGGAGUCAUCAACUGCGUUAGGGGAUCGAGCAGAAUCAAAAACUGAUCGAGAUCGAUAUUAUCUUCGUAGACCAAAUCACAGUACCGCACGUUACGACGUCCAGGGACCGCGUCAGUUGGCGACGGCGACGUGACGGAGUCGACUCUAUCGUCACCGAAUUGAUCGAUGGUGGCCUUCCGGAGGAUCCGGAUCUCCUACUCCGACCCGGACGCCACCGACUCCGACUCCGACUCGGACUCCGCCGACGCCGGCGACCACGAUAUCAGCAGCCGAAGCAGCAGGACCAACGCCGCCGCACGCCGGAAGGUGAUCGUCAUCUCGCUGUCCAGGAAGAAGGGAAGAUCGUUAUCGCAGUCCGGUCGUCAUUAUCGUCGUCGUCGUUCCGAAAUUCCGGCGGCCGCGGCGAAGGCGGUGGAGGCGGAAGAUUGGCCGUCGUCGAGCGACGGGAUGCGUCGUGGCGCCGUAGCGGCGGCGAGGUCGGCGUCGGCGGCCGCCAAGAAGGGUUCCCGCGGCGGCGUGUACCAGCGCCAGCCCGGGCGGUGGGCGGUGGACUUCCGGGACAGCCAGCUCAAGGUCCGGCAAUGGCUCGGCACGUUCCCCUCCGAGGAGGAGGCCAGGGCCGCCUACGACGCCUUCGAGGUGCAGGUCCGCGCCUCCCUGUCCCGCGGCGGCGCCGGCGCCUCCUCCCCCGCCGUCGCCAUCGCGCCGUCACCUGCCCGCGUCAAGAUCCAACUACCGGCGCCGCGGCGUGCAUCUGGCCGCCGGAAGAAGACGCAGACGACGGCGACGGUGACGACAACGACGACGACGGAAUCAUUAUCGCAAGUGACGGCCUCAUCAGCGUCCCCGUCGUCCAAGGAGGCGCCGCCGCCGUCGUCGUCAGCUUCUGCCGCGACGCCGCCGCCGCUGAAUCCGCCGCCGUUCGUCGUCGAUACAUUCCUGGGGGAGGAUGACCACCUCGCCGCCGACGAGGAUGACCGCUUCGGCUUCGGCCUCGCCGAUCUUGGGCACCUCCCGCUGCCGUUCUUGGAUGACAACGACAUGGACUUCAAGCUCAGCGACAGCGACGAUCUCUCCUUCCUCUUCGAUAUCGGCUUCAUGUGACGUACGUGACAAACCCAACACCAACACGUACGUACACUUUUGUUGUGAUCGAUCGAUUCUUCAUCGAUAGAUCGAUCUCUGCAUGCCAAUCCAUGCAUGAUCGAGUUACAUAUUACAUUAAUUGUAAAUCAACCAGGUAAUUCUUCCAUUUACCUACAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
269
NEP:
98.18%
LE_num:
LEP:
1.82%
ME_num:
0
MEP:
0.0%
HE_num:
0
HEP:
0.0%
Type:
LCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
blade
Tau :
0.90
Avg Expression:
0.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 20.8869592122607 | 7.35134144859982e-06 |