Source:
XM_015764839.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
730
Sequence:
AUGGUUGCGAAGUCAGGUGC
Length:
20
PHAS Gene Name:
LOC4352810
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC4352810, transcript variant X1
PHAS Transcript Sequence:
UUUUAUUCUCCCCUGCGCCGCCGCCGCCGCCGCCGCCUCAAUCGGGCGAAGCCGCCCUCGCCGCCGUCGCGGCGGCGGCGGCGAGGGCGAGCUCCUGCGAGAGAUCCUCCGCCGCCUCAUGCCUCGCGCGCGCGCUCCCGCUCCCGCUCUCGCCUGCAGUAUUUGUUCCAUUGCCGCGCACCACUUUCCGGUGGGCGGCGGGCAAUGCUAGGGGUUAAGAGACCUUCUCUCCCCGAGAUGGAGGCGCCGGGCGGCGCGGCGGGGGACGCGGAGGAGGAAGUUGAUGCCCGGAUCCGCUGGGUUCCAUGGUGGCUGCUAUGGAAUGGUGGAAUUGCUUGGAUGGCCACGAAGGGGAUCGACGCCAAUUGUUUGGCGACCUCUACGAUAGAAUCGCGUCGAGUCGGGGUGUUCUUUCCUGUUAUUACUAGAAGUAGUUGAAUUUCGUGAUUGAACACACAAGGAAGCUUGAUAUCGCGUCGGGGGUGUUCUUUCCUGUUAUUACUAGAUGUAGUUGGGUUUCGUGAUUGAACACCUAAGGAAAGGAAGCUUGAUAAAUGGAAGAUAGUCCAGCAAGUUUUGAAGAUGAUAGAAAAUUUGAGCGCGUCGUAGUAACUGUCGUCCACGAUCACGUCCAGUGUUGUUCAUGGCAUGGGGGAUGGAGUCAGGAUCCUUGAGGCGUCUGCUCCUGUUGCACUGCUUCAUGCCUUUCCUGCCUUCUAGGAUGCUUAAGAUGGUUGCGAAGUCAGGUGCUUGGGAGUUCAUGAAGCGGUCAUAAUCAAUUUCGCUCUCUGUAGUACUUUCUCUGGUGUCUUCCCCGUUGCUUCCUUUUGGAAGAAAAGCGUCCUUUAGAAUCUCUUGAGAGAGUGCACUUUCUCCCUCUCCUGCCAUCAGUAGUGCCUUUAUUUUCGCUUGGUUUCCGCAUCAUCAGGUGGCACUUAUAGAAAUUAUUUUAUGGAGGAAAAAGCAUUGUAUGGCAUGAUAGAAAUAUCCUUAUGGAUAAAACUAGGACACUUGCAAGUGUUCAAUGGGAGUCACCUUACCUUUUUUGCCUACCUGUCUGCAUUUCAUGAAUGGGAUUCCUUCUCCUGCGCCGGUGCUGUCUUCUCCAAUGGGAAAUGGAGGCAAGCAUCUGCCCUGUUCCAUGGUGGCAGCCAUGGAAUGAUGGGAUUUCUUUGAUGGUCAUAAAGGAGAUCAAAACCAACGGUUGGCAAUCUCUGCAGGGAUGAUGAACCAGGCUUGUAAUAUCUGUUGCUGAUUUCUUUGGAAGACAUAACGGCAGGCUUCAUGGGGCACGAUGGAUUUCAGAUGGUUGCUUCAGCCAUGUCUCAAGAUUCAGUUGAUGGACCUCAAGUUUCUGGGUGCAGUGCCACGAGUCUUGGUCAGCCCAAGAGUAAGCGCAGGACUGGUGACAAGGCAAGAGGGGAGAAGAAGGCACUCAAAGUUAAGAUUAACCUUGCCAGCCCGGCCAAAAAAAUUAAGUGCCACCUGAUGAUGCAGAAAAGUAGCAAAAAGAAGGGCAAAAAGGGCACUGUUGCUGGCAGGAUAGGGAGAAAAUGCACUCUCUCAAGAGAUUCUAAAGGGCGCUUUCUUCCAAGAGAGAGUAAGGGGGGAGACAUCGGAGGAAAUGCUACAGAGAGUGAAGUUGAUUAUGACCGCUUCAUGAACUUUCAGGCACCUGACUUCGCUACCAUCUUAAGUAUUUUGAAAGGCUGGAAAGGCAUGAAGCAAUGUAACAAGAUCAGGCGCCUCAAGGAUCCUGACUUCGUCCCUCUCAUGAACGUCAUGAGCAACACUGGAUAUGUGACCGAGGAUGAUGGUCACUAUGAUGUGCUGAAAGUCUUGAUGCAUGCAGAUGGCUGGUCUGCAUAGUGAUUCAAGCUCUCAAAUCAAAACAUUCAGGCCUAUGGCCUUGUUGCUAGAACAGUGGUUUCUUCUUUCACCUUUAAAACUUGAUGGACUUUGUUCCAUUUAUCUUAGAAAUUUUGUUGCCCUUGAGUCCGGUGGAUAUGUACUGGAGUAUGCUAUACUGGGUGAUUUAAUGGUGAUAAUGUUAAAUCUUGAUACUAGUUCUACCUUUUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
5.11%
HE_num:
HEP:
94.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.71
Avg Expression:
4450.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 7.16779914860846 | 0.00154158898471521 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -5.91297161164781 | 7.57737006068966e-12 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.18014431286326 | 0.043998359390978 |
| 4 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | -5.80738101772607 | 9.49728014994061e-06 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 7.87366664226459 | 1.78116182620811e-18 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 7.41504120929713 | 1.67079202828806e-23 |