Source:
XM_015768498.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
1247
Sequence:
AUGAACUAGAGUUGUGGAGCUGGG
Length:
24
PHAS Gene Name:
LOC107276173
Chr:
Chr2
PHAS Transcript Annotation:
calcineurin B-like protein 8, transcript variant X1
PHAS Transcript Sequence:
UCUUCCUCCUCUUCUUCUACCCUCUGUCCAUUGUAUCUGCAAUUCUGCAUUAAGCUUGAAAGACAGUAGGUACAGAGCUGUCUCUGUAGCUACUAGAUAGUCAUCCUCUUGUUGAACUUCAGUACUGAAAACAAGAUCUGAAUUUGUAUUUGUUUCCCAGGUUCCAUCUAUCACUUUAUGCAGUGAAAGUUUGUAACUACAGGAAAUUAAGGGCGUGGUUUGUAUAAAAUGGGCUGUGUAUCAUCAAAGCAGUUCAAAAGAGCUGCACAACAUGAGGAUCCUGCUAUUCUGGCCAAAGAGACUACAUUUUCAGUGAGUGAAGUGGAGGCCCUCUUUGAGCUGUUCAAGAAGAUAAGCCAUUCCAUAUUCAGAGAUGGUCUCAUUCACAAGGAGGAGUUCCAGCUAGCUCUCUUCAGGAACAGCAACAAGAAGAACCUUUUCGCCAAUCGGAUAUUUGAUCUCUUUGAUCUGAAGCGCAACGGUGUUAUCGAUUUCGGGGAGUUCGUUCGAUCCCUCAGCAUUUUUCACCCGGAAACGCCUUUGGGAGACAAGAUUGCCUUUGCAUUUAGGUUGUAUGACCUGAGAGGAACUGGAUGCAUUGAACGUGAAGAGUUGCACGAAAUGGUGCUUGCUCUUCUGAAUGAAUCAGAUCUAUUCCUAUCUGAAGAAGCUGUAGAACAAAUCGUGGAUCAGACGUUCAAGCAAGCAGACUUAAACGAUGACGGGAAGAUCGACCCCGAUGAAUGGAAAACGUUUGCGAGUAAAAACCCGGCUUUGCUGAAGAACAUGACUCUUCCAUACCUAAAGGACAUAACCAUGGUAUUCCCCAGCUUUAUUCUGAACUCUGAAGUUUGUGAGGAAGAGUUGUAACAUCCAUGGUACCCUCUGUGCUCCAUUUAUAUUUCUCACAAAGGGGCAUGACUACAUGGGGAAACCAUGGGAACAGAGCUAGAUGAAUCACAAUCAUCAGACAUGGGCACACAGUAUGCAGCAAUAGUGAAGACCUCAGCACUGAAGAACAGUAUGCAGGCUAAGGAUAAAAUGGUUCACCUGUACAUGACUGAUCUUCAGGUCACGAUGAUAUCUCUGAUGGAUCGCAGAAGUUGAGAUGCAUUGUGUUUGGGAGAGUUUCUGGCAGGGCUUGUUUGGCACAGCUCCAGCUCCAGCUCCACCCCUCCUAGAGCUCAGCCAAACAGUUUCAGCUCCACCAAAACUGGGAGUGGAGCUGGGUGGAACUCUCUCACAAAAUGAACUAGAGUUGUGGAGCUGGGUUUACGCAGCUCCACAACUCCACUCCAGACCCAACUCCUGGAGCUAAAUUUAGGAGUUGGAGUUGUACCAAACAGGCCCAUGACUUCUCCUGGAAUUUCCAGUUGCUAGAAGCCCCCCAAAACAGUCCAAAUUUUUAUCCAGAUUCUGAGAAGUUAUAGUUGUAGAAUCCAGAAAUUGAACUAGAAGCCAGAAGCUGAGUUUCCCAAAUUCUCCAGAUUCUUACCAACUGUUUCUCAAAAUCUUAAGCUCCCCAAACAUGGUAGGAUACCAUCAUGGUGCGUCGCAAUCUUGAGACAGUAGUCAUACACAUGCGCAUUUGUUGUGCAUGGAUGGAAAUUUUGUAGUAGGAUUUGUGCAAACUUAUUCCGAACUGAUCUUGUGACGAUUUUCAAGCUAUGUUUGAUGUCGCAUUUUCUUCAUUUAGCAAUGUUGUGUUACAGUUACAUAAUAAGUAAUGUCCAAAUGCAUAUUUAAUGUAGAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
271
NEP:
98.91%
LE_num:
LEP:
1.09%
ME_num:
0
MEP:
0.0%
HE_num:
0
HEP:
0.0%
Type:
LCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
1.00
Avg Expression:
1.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -8.20144652116064 | 8.30646584324794e-09 |