Source:
XR_003243351.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
3200
Sequence:
CGAACUCCAUCCACCUAA
Length:
18
PHAS Gene Name:
LOC112939595
Chr:
Chr7
PHAS Transcript Annotation:
uncharacterized LOC112939595
PHAS Transcript Sequence:
GGCGUCAAAUAUUUAGGGACGGAGGGAGUAAUAUAUUAGUAUAUGAUCGUCAUGGACAAAAAUAGUUUUGAGCAAAAGACACAACAGUAAUAAGAAGAUAUUUCCCAAUAUAUCGGUGGAAGAACAAAAGAAAUAUCUUCAUAGGAUAGAAAAUAUAUCAACGCUUGGAGUUGGACAAAUAUUCCAUUCAAAGGCUAUGAGAAAAUGAAAUUGUCUAAAUAAUAACAGAAAUAUUAGUUAAUUGGCGUUCGUGAAAAAUAUUAGUUAACACCAUUAACACUUGGAGAACUGAAAAACACAUGGGCUUGAGAGGUGUAGAGCAGAAGGCCUCGGGUCUCACUGGUGUAGGCUUGCAGGAGCUUAUAGCAACGUCAGACAGUACUCUCAUUUUGCCAGUGUCAUCUUCAAGUUCACUCGUAAUCAAAGAGUAUGUGGUGUUCCUUUCUGUAUUUAAAUCAGCACUGUCAGGAGCCAGAUUAUGAAAUGAAAAUCAGAACAAUGGACACACCAUAUAAACAGAGAAAGCCAUUAUAUGUAAACCAAUGGCCCUCAUUUCUUGUCACACAGUGAACUCUCCUUCAUCAUUCAGGAAAACAAACAUUGAGAAUUUUCAAUGGGAAUUUGAAGCACAUGAAAUUCCCAGCAGAAGAAGAUAGCAGUGUUGCUCUAGCCAUUUGCAUUUGAUACACAAAUUGGGUCUGAGCAGAGCAGUUAGGACUGAGAAUCAUCAGGAAAUUUAUCCUCACAGAAUUUUCAUCUCCAGGAGGGUUGUUGUCUGUGGGUAGGAGAUGUUCUGUAACCAUCCGUUAGGGAUGCAUCAAGGAUAUAUAUUAGAAAGAAAUCAGUGGUGGAGCCACCACCUGGGCAGGUCGGGCUCUGCCGAUGUCGUCUCCACUACGAACAGCUGUUGACACCUAUUAAAAUUAAUCGAUCACUGAAAAACGCUAUUAGUUGUCCAGACUUGAUGACAAUGCUGGCUCCGCCACUGAAAGAAGUUUUUGUUGGCCUCAAGCCGCCAUCUCUGAACUGGCUAUUCCAUUCCACCGAGAUCGAAGUGAUCUUCUGAUUGUGUUUGUUUGUUGCUAAUUGUCAUAGCGCCUUGGCUUAUCCCUAUUGAUGCGAGGCCAUGUCUUGAAAGCUAACAACAUCUGGGAUAUUAUCUUGUACUCUUCAGUCUUCAAGAUAGCGAUCACCCACUGAUGGAAGGUUAAGCUUGUGGUUGAGCCAUUAAAAUUAUGCAUAAAGUGGUAGCAGCCAGAUUCAAAAUUACAAUUGGUGGAGAGAUUGCAAAAAAAAAAAAGUAAGAGAUUUUUUACCAUAUAACAUGCCGAUGCGGUACCAAAUCGUCGCCAUUGAGUGGAUAGGAUCCAACGGCUGUCAUCACUGAGUAUCGUGAGGCACCCACUUGUUCUUGUGGUGGCACUGCAUUAGGAUGUGGAGGUGGAAGGGUACUUUUGUACUAUCGCAUGGCUGAUUCGGUCUCAUCCACUUGGAUUGUUUCAUUUGACACCGCCUCUUUCAUCUCCAUCUCCGCGUACCAACUUUGCAGCCCCGAUGUAUAGCGAGCAUGGUGUCUCCGCGGUGGCCGCCGUCGCGGAGAGAAGAGCGGGCGCACAACUGACGGCCCCGGACGAGCACGUCGAGAACCACAAAGCAUGGCUCCGCCAAGGAGGAGCUCAUAUUUACUGAAACACUCAAGUAGGUCAGAGAGUGAGUAGAAACAUAUCUUUAUUUUUAGGUGACAUUUAUUUUUCUAAGUUUUGUGGUUGUAUAUAAGCAUGUGAACCACAAAAUUAUAAACUCAUAUUUACUGAAGCUACAGCACACAGGAGGGGGCAAUACAGGUGCCAAAUUUUGACCUUUUUUAGUCAUUUCAUAUUAUUAGUCAUUUUGACCUUUUUCUAUUCAAUUUUUUAAAAAAUUAUAACAGCGUUUUCAACACAAAAUAAAUAUAUUACCAAAAUAUAUUUAAUGAAAUAAAAUUGGUAUUUUGGAUGUUGUUCUAUUUUUCUAUAAACUUGGUCAACUAAAUUAAAAUUGACUAAGAAAAAAUCAAGACGACCUAUAAUAUAAAGGUAAAUUUUGCUUCAGGAUACUCAAAAUUUGUGUUAUUUGUGGACAGACAUAAAAAACGUGUCAUUAAUGAAAGAUAUCCUGAAUAUGAUAAUUUGCUAUAGGAUAUAUUUGGCUAAAUUGGAGAGAUAAAUUCUUAAGAAAGACGGGAAUGCCCCUAGAACCACAUGUUUCAAACAUGACGUUAGAGUAAAAAUUUAGAUGUCAUCACCCCAAGUACAUCAUUAGCGUACAUCAUAUUCCAUCUUCACUCCAGUCUCAACUCAAAAGCUUUUGACUCUAGGGACAUUCUUGUAUUUUUUUAAAAAAUUCUCUCUCCAAUUGAGCCGAAAGUGUCCUCUAGCAAAUUACCAGUGUUUUAGAGUGUCUUUCAGUCAUGACAUGUUUUUACAAUGUCUAACAACAAAUUAUACAAAUUUUGAGUGUCAUGUAGCAAAUUUUGCAUAAUAUGAAGGGUCUGUUUGGCACAACUCUAGCUCCUUCUCCACCUCUCCUAGAGUUAGAGCUCAGCCAAACAGUUUUAGCUCCAUCUAAAAUGGGAGCGGAGCUAGGUGAGGCACACUCACAAAAUAAAAUAAGGAGGUGGAGCUGAGUUUAGAUUGCUACACAACUAUACUCCAGACCCAACUUCUGAAGCUAAAUUUAGGAGUUGGUGCUUCACUGAACAGACCCGAAAUGGAGGGAGCAACAGACAAUCACACUUGUGAAGUAUUCAAGAGAUGGAACACAAGAAACAAAACUUUGAAAUAUAAGUAUUUAAUUCGAAUUAUGUAAAUUACAAGUUAGUUCCCAAAUUAAUUUCUGAAAUACAUUAUGUUUCCUGAUAUUUUUCAGAUGCAUUAAAUUGACGAUCUUCUUAACUUUGGUCAUUAUUGCGUGCCAAGAAUUUGCUGUAUAUAUUACACCGUUGUCAGUAACAUGUCCAUUGUUUUUUUUUCCAAGACUUCACAACCACGAAGAGCUCAAAUUCAUCCUCAGUGUGAGCCAAUGCAGGGAUUGGGAUGCGUCAGGAAUAUGGAUGUGCCAUAUCUUUGUCCUAUCAUCUCAGGUUCUUAGAUGAACGGAGUUCCAUAGACCUGUUCGUUCCGAGCACUCGUCCGCGUAUGUUCUUAGGUGGAUGGAGUUCGCGAACUCCAUCCACCUAAGAGCACUCUUGCGUGCAAGUGCUCAGAACCGGGGAAAAUGGAUGUGCCAUAUCUUUGUUCAUCAUCUCAGGGAUGCAAAUGAUGGUGUGCUUCUGAGAAAUAUCCCAGCAUUUGCAAGAAUUACUCAUUUGGUUCAUCGCUCAGCGGCUGGGCUACAGGAAGCGGAUUCACCUGACCACUGCUCUCAACCAAAUUGUAGAGCUGUAGUAGAGGGUGUGCUCUUGAUCCAAUCAAAAGGGAUUGGAGAGCAGUUCAUUUCCUCUUCAGAUUUUAAUGGAAGGAAAAGACAAUUUGUUUCAGUAAAUUCAGAGAUCCAAAAUGAAGCUUACAUAUAUGAGAUCUUAAUAAGCAAGUAAGUUAAAUAGAUAGAGGUUGUUAAAGGGAAUAUGUGAAUGUGACGUGAGUAUUAUAGAAUUUUCUCAUCACUUGUACACGUUAUGCAGUCUUUGAGCCAAAGUUAAUACAUACUGAUGGAAAGGUUAAGCUGGUGACGACCCUUUAAAAUUAGAGAAAAUUCACUCUAUGCCACGAAGCUUGCCCGAUUCAACGAUUUGCCAUUGAAACAAAUUAAAUACACAUAGUAAAAUUGAAAAAUGGAUUUAAAAAAAAUACUCUAUGAAAUUAAUAUAUAGAAAGUUCUAUAAAAGAAUAGUGCUGAGCUCACCUGAAACAUGCCCUUCAACUGUUGUAUUUGCUAAAAAAACAAUCCUAGUAUUACACUAUGGAAUUAAGCAGGGACCAUCUAUAUAACGAGUCAUCUUUAUUCCUCAGUAGUCGUUCAGUAAUAUUGUUGGUGAAAAUCAUCAUCUGAACAGAAGCAAUAUAGAAUGUCCAGCCUGCAUAGAAGCAUUGGUGCUUCAGUCAUAGGUACCAAAUAUUGGAUCUUAGGAUUGAGAAGUAUCAGUAAAGCCGUCAUGACAGUGUUAGGGACUUCUACAGUUGAGUUAUUGUGUAGAUCCAAAUUCUAGUCUCUACGCAGAUUCGUGAACUCAUCCUGAAAGUCCUCUUGACAUUUAUCCACCACAGCGAUUUAUGCAGCUAGACAUUGAUUAGGCGAAAUACGCCAUCGUGAAGAAACAAAUUCCUAAUGUCCAUUUACAAUGUUUUUACUACGAUUAUAUAUAUGUCAGUCUCACAAAGAUGGGCAUGCACGAUGGUUAAAUUUAGAUGGCUGAUUAAUCUCUAAGAUGUGUUCCUGUUAAUCUUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
239
NEP:
87.23%
LE_num:
LEP:
0.36%
ME_num:
MEP:
4.38%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.90
Avg Expression:
182.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -8.72787860968424 | 1.06256836026725e-05 |
2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.34938253316339 | 0.0165215123202906 |