Source:
XM_026022265.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
1998
Sequence:
CCACAACAACCAUGGUCGUCA
Length:
21
PHAS Gene Name:
LOC9269040
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC9269040, transcript variant X4
PHAS Transcript Sequence:
UUCCUCUCUCCCAAACACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGACGACGAGGAGGAAGAUGGCGGCGGCGCAGCCGCCAUUGCCGUGGGGGGACCUCCCGGCGGACCUGCUGGGCCUCGUGCUCCUCCGCCUCCCGUCCCUCCCCGACCGCGUCCGCCUCCGCGCCGUCUGCCGCUCCUGGCGCGCGGGCGCCGCGCGGGGUCGCCACCCGCGGCUGCCCCCGCCGCUGCCGUGGCUCGCCCUCCGCGACGGGGGCCUCGUCGACCUCGACGGCGAGCCCAUCCGCUGCCCCACCCCCAUCCCCCGCCACGGCGUCGUCGGCCACCUCGCCGUCGACAACCUCGCCUUCCUGAUACACCGCGACGGCGGCUGCUCCCUUCUGAACCCCCUCUCCUCGUCUGCUUCAGCGGCGACGGCGGCGAUCACGCCUCUCCCAUGGCUGAACCUCGCCGCCGUGGACGGAGCGAUCGGCCAGCCGGGGGUAUUCAUCGGGAUCGGGGCCUACGUCAACGUGUACUCCAAAUCGGUCCUCUCCUCGCCGCUCGAUUCGUCGCCGGAUCCCCUCGUCGCCGUCGUCACAUCGGGCGGGAGGCACGUCGCCGUCGCCCCUUGCAAGCGGCGAGGCGUGGUCACCAUCGUCUCCGGCCUCAUGGCGCCACAGAUUCCCGGACUGAAUCCUACUCGGUUCUCCGACAUUGCGUUCUUGGGUGGAAACCUCUACACGCUCACCAAUGCAGAAGGGCUCCUUGUUCUUGAUCUCGGCAGCAAUGGCGUCGACGAUCCACCGAACGCGUCGCAUCGUCGGUGCAUCGCCGAUGAUCCCAACCAGCAUGAGUAUUACAUCGAUGGGAGCACUAAGAACAAGUCUUUGGUGCUGAGAUACCUGGUGGGUUCCAAUGGCAGGCUGUUGAUGGUGAGGAGGUGGAUGAACUGUCGGCAGCAGUAUUACGCGGGUGACAUGGACAAGACGCGGGGAUUCGAGGUCUUUGCGGCGGUAAUCUCUGAUGGCCAUGGCCAGUGGGUGAAGGUGGACAGCUUGGGUGACCAGGCAAUCUUCCUUAGUUCAGAGUGCUCCAAGUCUGUCACUGCUAGCCAAUGUGCAGAUGGAAUUCAGCAAGAUUGUAUCUACUUCAUGCAUAGGAUCUACGACAAUCCGACGAAAGAGUGCCACGGCCCAUGUGUUGAUCCUCUUGGUGACUCUGGCGUGUACAACAUGAGAGAUGGGACAAUCAACCUUUUGCGGCCCAGGGCGGUGAUGUCUGAGCUGCGCUGGAAACGCCAGUAUCUGACUUGGUUCUUCCCUUCUGAUGAGUAAUGAUACACAAAAUAGGAUUGCCUUCAGAUAAUCAGGCCGGCGGUCAGUGAAGAAGAAAUGGGUAGGUUCUAACUACAAUUUUUUAAAAUUUUGUUUCAUUAUGUACUGGCCAAAUUAUUAAUUAAUCGUAUGUCUUAAUCUAAAUGAAAAUGUAUUGAACCUUAUUAAUUGUCUCCUUUCUAUUCAGUCCACCGAAUGCUAGGUAGCUCUAGAAUGUUCUUAGUUAGUUUUGAAGGAUAAUAUGGCCAUUUCAUGGCAAGCAAGUGAUUAGCUAAAUAUGCAUACUAUGGUCAAAAGUGAUAACUAAACGUGAACAGAGGAAGUAACAAUUUGCAUGGCAUUUGAGAUGUUCACGCUUUAGCUCAACCAGAAUGUUGCUAUCAACAAUCUAUGGCAUUGCAUCGUAGCUGGACUCGCAAUUAUGUGAACUGUGCGUAUCUUCUUGUUUUUUUUUUUUGGGGGAAGGAAUGCAAAAGCUUUGCUUUUUUUUAUUAAUAGAGAAGGAGAAAACCCACAAAAGUAUUAUAUACAUGGUCUAUCAUAAAAAUAAUAGACCUGUAAAACAGAACAAAAGACUACUCUCUGAAGGGGAUGAUCUCUGUGAUUUUGGUGGCUCCUGUCUUGAUCCACGUCUGUGCUUUUUCCUUAAUCUUAGUGACGACCAUGGUUGUUGUGGCCACAACAACCAUGGUCGUCAUGGCAUUGCGCUCGCACUAGAGCCCCCAAGCCGCAAGGUUUUCCUCGGGACGUGGGGUAUGCGUGAUGGCUUGUACCACCAGUCUUCUACGUUUGUGCAAUCGACCUUCAUGAAUUUGGAGGUCUAGGUUUGCCCAUCUCUGGACAGAAGUCCAGAGUCUUCUCAGGUUUGGUAGAAAAACUCCUGAUGCUUCUCAGACCUACCAUUUGGUGUAGCACUCAGCAUGACCAUGUAGACUACCCAGGUCUGAACUCAGAGGAGAGAUCCUUAUAUAGUCUUACCUUCAUAGCAAAGAGAACAAAAGAAAAAGAAAAGAAGAGAAGAGGACAAUAGAAAAGAAUGCUGCAAUCUGGCUACAUGCAUUUAGUACUCAAAAUCGGGUGGACAUAACUGUCUAUAAAUAAGUGUUAGGCACUUAGGCCUAUAUCUUGCAUGAUCCUGCAGAUGUAUUCGUCUAGUUGAUCUCUGCCUAUUGAACCGUACUCAUCUAGGUGACACGUCCAGUCUCAACAAGGUCUCUGUAUAUUAAAAAGCAUCCACUUCUGUUCAUGAUCAGAACAACAAGUAGCAGAUGAUUAUGCAUAUGCCUGAACAAGCACUGAAAAAGUUUUGGAAUCAUUUGCAUAUAAUUAAUAUAAUUUACUCUGUUUCUUCUUUAGAUAAUUUACUCUGCUUCUACGUAGGUACAGAUCUGCCAACCAUAUUAGAAGAGCAUCCAACAUGCCAGUAAUACAUUUUUCAUCAAGUUAUCUAUAAAGCAGUGGCACAUUAUCAGGAAAAAAAGGGCUCAGAAAAACCUUUUUUUAAUAAUCCUUCGGUUUUUUCUAAUGAUGGAUAUUACAGAUAUUGUGCAUUCUUAUAUUUACACACAGGUCAAAUGAACUCUUAAAAUAGUAUAGAGAAACUUCAGUCGCCAUUGCUAAAGAUAAUUUAUCAGUAGUUCUAACACCAUUGGAUUUAAGUAGGCAACCAUGCCAUUUAGUAAUAUAUAGAAGGGUCAGUUAUAACACAUGAACUCCUGAUGCCUCCUAAGUCUACCAUUGCAAAUGUCAUUGGAGGCUUGGAGCAGCCUGCAUGGACUACUGUUCAUGUCUCACCGGUAGCUUUGCGGCACUUGGUUCUUCUUUUACUUCUCUUUUAUGGACCAAGACAAGUCACCAUAUAUAUCUUGUAGGGAUGUAUUGUUUGGUUCAAUACAGUUAAGUAUGCAAUGUAUAUAGUCAUGUUCAUUAGGUGAGCUAGAAAUAGGACUGGGCUGCCAGGGAUUAAUUAGCUGACUAAGGGCCCAACUCAUUUCAUGUUUACUUGGUAGUUGGUAUAUAUUAAAUCACCAUAUCUAAUGAGAAUUAAACAUUUUUGCUUUACACAGAUUUUUUAAUCUACGAAAUGUUGUCUAAAAUUUGUUCUGCCGGAAGCUAUUCUACUCUAAAUUUCCUGGUCGUAACUAACUUUAUGUAUUAGUUUCUAAAAAUUGAUAAUAAUACAUCGUUCACCAUUUUUUAUUCUACCUUAAUUUGUCAAGAUUAUGGAAACAGUUUUGGAGAGCUCAAGUUGGGCAAUAGACCAUGAAUAGAUCCUAGAGGUGCUUCAGCCCUUGUUUAGUUUCCAACUUUUUCUUUAAAUUUCUAACUUUUCCAUCACAUCAAAACUUUUCUACACACAUAAACUUCCAAUUUUUUUCUUCAAACUUCCAAUUUUAGUCAAACUUCCAAGUUUGUCAAUAUCUGGAAGAUGCUUACCAGGACAUAACUAAAUGUCAUCAUGUUCAGGUCUUUCAACUCAUGACAAAGUAGUGUGAAAUGCACCCCAUGAGCUGGCCACAAGUGACAAACUGCCAGUAGAACUCCCGAUGCCUUCUAUGCCUAUGAUUUGCCAGGAAAUGCUGGAGCUAUUUGAGCUUUAACAUCCAUAUGAACCUGCACUGAGCACCAAUCCUCAGAUUUUGUUUCAAUCCUUUUAUGGGCCAAAUAAAAUAUUGUGAUGAGAUAUACUAUCUGAUGAUCUGAUCUUUCUUAAGAAGAAAGGCCAGAAGUUCUGGUAUUACAAGAUGGUCCUCUUGAUUGUCCAAUAGGGGGAAGAUAUAGGGGCAACUGCCUGAACAAAGAAAUAAAGGAGACUUCGGGAAUAAUUUUAUUGUGGUUCAAUGUGCACCUACUAGUUUACCAGACUACAUACUGAAUGUAUGCAUGCCCCACUAUAUAAAAAAUUUCAGUGGGAAGCCCUAAAUGCCCCAUGGUUAAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
272
NEP:
99.27%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.73%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
1.00
Avg Expression:
0.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -9.085831060771 | 3.28054625885364e-07 |
2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.72181778048339 | 0.00370433331908985 |