RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi10g0166

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XM_015757910.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

828

Sequence:

CUGACCCGGAACAUCCAACAU

Length:

21

PHAS Gene Name:

LOC4348527

Chr:

Chr10

PHAS Transcript Annotation:

phosphoinositide phosphatase SAC2, transcript variant X3

PHAS Transcript Sequence:

CUCAAUCAUUCCCAUCCUCGUUCAUCCGUCAGUGGCCCCUCUUCCUUUUCCAUUAUCAUGAGCAUGUCUUCCCCAAAACAUCUGCUCGCCUAGAUAUACCACUUCAUGCGACCUCCGUCAUCCGGGCCAUUACUAUGAGAACUCUCUUACCUGUUCAGGAGGGACGAAACAUGGUGGGUGCUGAAAAUUGACCGCACCGAGCCGACGAGCCUGGAAAUCGAAGAUUUGGUCGAGGUUAUUGAGAAGAAGCCUCGUGAGUCUUUGCAACGCGUACAAUAUGCGAAAGCCAUUGACCACAUAAACAAUGGGUUAUCAAAUGAUAAGCAGUUAAUGGUUAUUCAUAUGGACUUGAAGACUUGAAGCUGUGAGCUGUUUCCAUGCUUGCUAAUGGUGGGAUUUGCCUCAUUAGCUCAUUCAGACUUUCUACAUUGCCAACUUACUACAACAUCGUUACCUGAUCGCACUCUAAGGGAACAAAACGAUGUUACCAGUGCAAGUAGCAGUACUAGCAUGAAUGAACCCAAAUUUGGGAUAAUAGAGAUACUGCCAAUUGUGCUGCAAAAGGGAGUGCUCAAGACUAACUGCAUAGACAGCCGAGACCGCACAAACAGAGCCCAAAUUGUGGAUGGACUAGUCGGCUUGGGGCGCCAGCUGAAGGCAUUGGUGCAGACUAAGGGUUUGGAGAUUCAUAUAGAAGAGCCCUUGUCAAGCACCUUGAUGCUGUUCUAUGAGGAAAUGGGGGAUGCAUUGGCUCUUCAGUUUACUGGCUCUGCUGCUCAAAACAAGGAGUUUUGGAAGCAAAAAGGGCAGUGGAGUGCAAUGAAUAAGCUGACCCGGAACAUCCAACAUUUUGUGAGCAAUGCUUACAUGGACAGUGAAAAGCAGAAUUCUCCAAACAUGUAAUAGAAGAAACUCCACUGCUGUACAACCAUCCAACAAUCUCAAAAAUCUGCAACAUAUCUAACCACGUUGCGUGAAGGAUAUGAAACCGGUAGCAUGGAGGAAACAAAAAGGACUACUAUAAUUACUCAGCUUGUGAAAAAAAUGUUGAGAAAGUUCAUAUACUUGAGAAGUAAAGCCAGUGCCAGCAUCCAUUAUUAAAGCCCACAGAUUCGAACAAGAAGCUACUGAACUAAUGAACAAUCCAUCUUCAUUUCCUUCUGUAAUAUGCUGUGCCAACGUACCAUCUGCAACAUUGUAGUGAUACCUGCAAAAGAAGUGUGGCUAGUGUGAAAUUAUACUGGUCUAGGCAACAGUUCAUAGGAUGCUCUGCAAGGAAUAUCAUAAAAACAUUUAUCCUGGCAUCUAUGUAAAAUAGACAUGAUUUGGGAUUACUAUAGGAGAAUCUUAACAAGGAGCACAUUCACAGUCCAUUCAAGUUCAAUUCAGUUCUGGUAUUAUAAGUGGAUCUGAUGAUGGGGUUAGUGAAAGAUGCCAAUCUUCUCGGGUCAGUUGAUGUGCAUUCAGUAUAUAUGAAGAAACAUAUCCUUGUGACAUUCAAUUUGUGUAAACUCUUAGCUUAGUUGACCACAUAGAUAAAGAUGGAAUGUUAAAAGGAGUAUUUGUUCAUGAUGUAAUUGUCUCCUCUGUAAUUACAGCCCAAAAAAACGUUGUUUUUGUUCUAUACAGUCUCUUUUCUCGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

270

NEP:

98.54%

LE_num:

1

LEP:

0.36%

ME_num:

3

MEP:

1.09%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosperm

Tau :

0.93

Avg Expression:

1.98

Tip: Osa-phasi10g0166 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-22.31187425805517.01434079370806e-08