Osa-phasi05g0029


Function Link


Basic Info

Source:

XR_003242590.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

989

Sequence:

UGAGGUAGGAGAUGGCUGGCC

Length:

21

PHAS Gene Name:

LOC112939092

Chr:

Chr5

PHAS Transcript Annotation:

uncharacterized LOC112939092

PHAS Transcript Sequence:

AGGUAGAAAUGACUAACAUGCUGAUUAACUAUAUGCUAUAUAUGACAUUGAAUCCUAAAUAUUCAUAGAUAACACACUGUAUUUCCCCUGCACUAAUACUAUACUACUAUACUAAAUAUUCUGAAAACAAAAUAGAGAGAAAGAUGAGGGGGGAGGAAAAAUAAAAAGGACAGAGAUUCCCCUGAUCCUGAAAGCCAGGCUAAAAGGGUUGGGACUUGGGAGCCACUUUGUCCCUAGUUUCAAUUCAAGGAGGCCCUCUGUGUCAAUCCAUUAGAUAUGCCACUACUCUCUGUUCUUUGGACUAGUAUAACUCUGCAUCCAGACGAGGGAGCAGCAGCCAGCAAGGAGAUCAGUGUGGAGCUGGACCUAAGCUUCGCAUGCAUAUAUGCAUGCUACCCUGCAUCCAUUUCUGAAACCUAGAGGAGUAAACUAGUUAUAGUACUGUACAUAGUGAUAUCAUCUCCUGUAAUAUGAUUCAAGAGAAGAUGUUUGUUUGGAAGCUGUCAAAAUAUGACAUACUGGAUGAUCAAAACCCUAUAUCUCCCAUCAGUAUCAACAACAGCGUAAGCAGUUUCUUCGGUUGCCACAGUGGCAAGAGGGAGGAAGAAACAUCAUCAUCCAUCAUGAUUUUAAUACAAGAUCCUCCUCAAACAGCAUUGUUUUACAUCAUACCUGAAAAAGUAGCUACGAAAUCGUUCCAUAUAGCAUUGCAAGUACAAGUAAGCAUUGUGAUGUUCUCGUAGCUUGCGAACCGGUGCUACCCCGACUGAGCUUUUCUUCUUCUAAAAACUUCUCCAACCACCAUACAUCUUUUCUGGUGCUUUAUUUGUGCUAGAAUUAAUAUUCUUGACCUUGUAAGGCCUUUUUCUUGACCUUGUAAGGCCCUCUCACAUCGUUUUCCAUCUCAUUAUGUACCUCGUGCAUCUCUUUCUUGAUAUCUACAAGAAUGAACCUGCCAUCGCCAAGUUGGCCAGCCAUCUCCUACCUCAUGAGGUAGGAGAUGGCUGGCCCCUCCUGAGCUAGCUGCACCAUCAUAGCCUUUUUAUGAGAUAAUCUCAAUUAAUGGCUAGUGUUUUUAGGCACUUGUGAGUUUCUCCCACAUCCUAGUAGUUAAUGCUACUUCUGGUCAUCCAUUGAUUUGCUCUUAUAUGCAAAAUAUAAAUGCAAUGGAAGCUUGUCUUUCUCAUUGAAGUUAUCACUCACCAAAUGGUGCUGAUCGAAAUUUGUAAUGAUGUAAUUUUGUAAUUCUCAUUUGAUUAAUGUGACAUUUCCUUCUUGCAACUUAUAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

242

NEP:

88.32%

LE_num:

14

LEP:

5.11%

ME_num:

17

MEP:

6.2%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf_sheath

Tau :

0.91

Avg Expression:

4.56

Tip: Osa-phasi05g0029 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h-8.89415573475110.0115287483069759