Source:
XR_003242590.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
989
Sequence:
UGAGGUAGGAGAUGGCUGGCC
Length:
21
PHAS Gene Name:
LOC112939092
Chr:
Chr5
PHAS Transcript Annotation:
uncharacterized LOC112939092
PHAS Transcript Sequence:
AGGUAGAAAUGACUAACAUGCUGAUUAACUAUAUGCUAUAUAUGACAUUGAAUCCUAAAUAUUCAUAGAUAACACACUGUAUUUCCCCUGCACUAAUACUAUACUACUAUACUAAAUAUUCUGAAAACAAAAUAGAGAGAAAGAUGAGGGGGGAGGAAAAAUAAAAAGGACAGAGAUUCCCCUGAUCCUGAAAGCCAGGCUAAAAGGGUUGGGACUUGGGAGCCACUUUGUCCCUAGUUUCAAUUCAAGGAGGCCCUCUGUGUCAAUCCAUUAGAUAUGCCACUACUCUCUGUUCUUUGGACUAGUAUAACUCUGCAUCCAGACGAGGGAGCAGCAGCCAGCAAGGAGAUCAGUGUGGAGCUGGACCUAAGCUUCGCAUGCAUAUAUGCAUGCUACCCUGCAUCCAUUUCUGAAACCUAGAGGAGUAAACUAGUUAUAGUACUGUACAUAGUGAUAUCAUCUCCUGUAAUAUGAUUCAAGAGAAGAUGUUUGUUUGGAAGCUGUCAAAAUAUGACAUACUGGAUGAUCAAAACCCUAUAUCUCCCAUCAGUAUCAACAACAGCGUAAGCAGUUUCUUCGGUUGCCACAGUGGCAAGAGGGAGGAAGAAACAUCAUCAUCCAUCAUGAUUUUAAUACAAGAUCCUCCUCAAACAGCAUUGUUUUACAUCAUACCUGAAAAAGUAGCUACGAAAUCGUUCCAUAUAGCAUUGCAAGUACAAGUAAGCAUUGUGAUGUUCUCGUAGCUUGCGAACCGGUGCUACCCCGACUGAGCUUUUCUUCUUCUAAAAACUUCUCCAACCACCAUACAUCUUUUCUGGUGCUUUAUUUGUGCUAGAAUUAAUAUUCUUGACCUUGUAAGGCCUUUUUCUUGACCUUGUAAGGCCCUCUCACAUCGUUUUCCAUCUCAUUAUGUACCUCGUGCAUCUCUUUCUUGAUAUCUACAAGAAUGAACCUGCCAUCGCCAAGUUGGCCAGCCAUCUCCUACCUCAUGAGGUAGGAGAUGGCUGGCCCCUCCUGAGCUAGCUGCACCAUCAUAGCCUUUUUAUGAGAUAAUCUCAAUUAAUGGCUAGUGUUUUUAGGCACUUGUGAGUUUCUCCCACAUCCUAGUAGUUAAUGCUACUUCUGGUCAUCCAUUGAUUUGCUCUUAUAUGCAAAAUAUAAAUGCAAUGGAAGCUUGUCUUUCUCAUUGAAGUUAUCACUCACCAAAUGGUGCUGAUCGAAAUUUGUAAUGAUGUAAUUUUGUAAUUCUCAUUUGAUUAAUGUGACAUUUCCUUCUUGCAACUUAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
242
NEP:
88.32%
LE_num:
LEP:
5.11%
ME_num:
MEP:
6.2%
HE_num:
HEP:
0.36%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.91
Avg Expression:
4.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -8.8941557347511 | 0.0115287483069759 |