Source:
XR_001544388.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
724
Sequence:
CCUUCUCUCUCGGUCUAUCCC
Length:
21
PHAS Gene Name:
LOC9267531
Chr:
Chr3
PHAS Transcript Annotation:
uncharacterized LOC9267531
PHAS Transcript Sequence:
GGAAGCUCACACGCUAGAGACCACUAGGCCAGCGCGAGCGCCCAGCUAUAGCCCAUCGAUCUCUUGGAAAAGCCUGAGAUCAAAUCCCAGCUUAACUCCCCAAAGAUUUCCUGACUCCAAAUCUCCAUCCGCUCCGCAGCUACCUUCUCCCCAUAUAUACACGCGCACUCCCUCCCCCCUCUCCAGCCUCCAUGACCCCUCCUCGCUCACCUUUCUCUCUUGCCUGAGCCAAGAGCUACACUUUCUAUAUCCACCACUUCACCGUGCAAACCCCAUGCACACGCCUUGACAGAAGCUGAGCUAGCUUCUCCUGCGUCGCUGCAAGCUGCUACUUUGGUUCGUGACUGAAAGCCAAAUGGAAGAUACGGAUCAGGAGCUAUGCACCGUUGCGGUGGAGAUGAUGAGUUCAGGAAAACUCAAGCCAUGUAGACACUUGUUGUUCUAUCAAGACUCCCUUCACCGAGAAGCAUCCAUAAAAAUGGUUCAUGUUUAGCAAUAGCACGGUGUUAUCCUAACUGAGCUUUUCUUCUAGCCACCGUCCACAUCCUUCUUCAAAACCUCAACAUCACUUUGUGUGGGAAUUAAAAGGAAUUGGUCUUCUUGACCUUGCAAGACCUUUUCUUGACCUUGUAAGACCCAACAUCGUUGUGUUGUUUUUCUUGUUUCUUAUUUUUCAAUUUCAUCCACCUCUUCUUUCUACCUCCCAUCUUUCUCCUAGUUCUUGCCUUCUCUCUCGGUCUAUCCCUCCUGAGCUGUAUUGAUCACUUUCUAUGUUAUUUUCUCGAUGUUUAAAAGAAAAUUAAUUUUGUUUAGCAAUAUACGAAGAGAUUGUGAAAUUCUAGUAUACCUGUAAAUUGUAAUAUUAUUGCUUGCGUGAUAUAAUUUGUAAUAUUAUUAUUGCUUGCGUGAUAUAAUGUAUUUCUGCAGUCAGAGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
83
NEP:
30.29%
LE_num:
LEP:
11.68%
ME_num:
MEP:
36.86%
HE_num:
HEP:
21.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.80
Avg Expression:
165.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 6.81245555149568 | 0.0153380982640319 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -2.75133330392349 | 5.37186870146128e-06 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -9.68903005845485 | 9.20291853955747e-05 |