Source:
XM_015764845.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
1605
Sequence:
ACAGAGAGUGAAGUUGAUUAU
Length:
21
PHAS Gene Name:
LOC4352810
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC4352810, transcript variant X4
PHAS Transcript Sequence:
UUUUAUUCUCCCCUGCGCCGCCGCCGCCGCCGCCGCCUCAAUCGGGCGAAGCCGCCCUCGCCGCCGUCGCGGCGGCGGCGGCGAGGGCGAGCUCCUGCGAGAGAUCCUCCGCCGCCUCAUGCCUCGCGCGCGCGCUCCCGCUCCCGCUCUCGCCUGCAGUAUUUGUUCCAUUGCCGCGCACCACUUUCCGGUGGGCGGCGGGCAAUGCUAGGGGUUAAGAGACCUUCUCUCCCCGAGAUGGAGGCGCCGGGCGGCGCGGCGGGGGACGCGGAGGAGGAAGUUGAUGCCCGGAUCCGCUGGGUUCCAUGGUGGCUGCUAUGGAAUGGUGGAAUUGCUUGGAUGGCCACGAAGGGGAUCGACGCCAAUUGUUUGGCGACCUCUACGAUAGAAUCGCGUCGAGUCGGGGUGUUCUUUCCUGUUAUUACUAGAAGUAGUUGAAUUUCGUGAUUGAACACACAAGGAAGCUUGAUAUCGCGUCGGGGGUGUUCUUUCCUGUUAUUACUAGAUGUAGUUGGGUUUCGUGAUUGAACACCUAAGGAAAGGAAGCUUGAUAAAUGGAAGAUAGUCCAGCAAGUUUUGAAGAUGAUAGAAAAUUUGAGCGCGUCGUAGUAACUGUCGUCCACGAUCACGUCCAGUGUUGUUCAUGGCAUGGGGGAUGGAGUCAGGAUCCUUGAGGCGUCUGCUCCUGUUGCACUGCUUCAUGCCUUUCCUGCCUUCUAGGAUGCUUAAGAUGGUUGCGAAGUCAGGUGCUUGGGAGUUCAUGAAGCGGUCAUAAUCAAUUUCGCUCUCUGUAGUACUUUCUCUGGUGUCUUCCCCGUUGCUUCCUUUUGGAAGAAAAGCGUCCUUUAGAAUCUCUUGAGAGAGUGCACUUUCUCCCUCUCCUGCCAUCAGUAGUGCCUUUAUUUUCGCUUGGUUUCCGCAUCAUCAGGUGGCACUUAUAGAAAUUAUUUUAUGGAGGAAAAAGCAUUGUAUGGCAUGAUAGAAAUAUCCUUAUGGAUAAAACUAGGACACUUGCAAGUGUUCAAUGGGAGUCACCUUACCUUUUUUGCCUACCUGUCUGCAUUUCAUGAAUGGGAUUCCUUCUCCUGCGCCGGUGCUGUCUUCUCCAAUGGGAAAUGGAGGCAAGCAUCUGCCCUGUUCCAUGGUGGCAGCCAUGGAAUGAUGGGAUUUCUUUGAUGGUCAUAAAGGAGAUCAAAACCAACGGUUGGCAAUCUCUGCAGGGAUGAUGAACCAGGCUUGUAAUAUCUGUUGCUGAUUUCUUUGGAAGACAUAACGGCAGGCUUCAUGGGGCACGAUGGAUUUCAGAUGGUUGCUUCAGCCAUGUCUCAAGUUGAUGGACCUCAAGUUUCUGGGUGCAGUGCCACGAGUCUUGGUCAGCCCAAGAGUAAGCGCAGGACUGGUGACAAGGCAAGAGGGGAGAAGAAGGCACUCAAAGUUAAGAUUAACCUUGCCAGCCCGGCCAAAAAAAUUAAGAAAAGUAGCAAAAAGAAGGGCAAAAAGGGCACUGUUGCUGGCAGGAUAGGGAGAAAAUGCACUCUCUCAAGAGAUUCUAAAGGGCGCUUUCUUCCAAGAGAGAGUAAGGGGGGAGACAUCGGAGGAAAUGCUACAGAGAGUGAAGUUGAUUAUGACCGCUUCAUGAACUUUCAGGCACCUGACUUCGCUACCAUCUUAAGUAUUUUGAAAGGCUGGAAAGGCAUGAAGCAAUGUAACAAGAUCAGGCGCCUCAAGGAUCCUGACUUCGUCCCUCUCAUGAACGUCAUGAGCAACACUGGAUAUGUGACCGAGGAUGAUGGUCACUAUGAUGUGCUGAAAGUCUUGAUGCAUGCAGAUGGCUGGUCUGCAUAGUGAUUCAAGCUCUCAAAUCAAAACAUUCAGGCCUAUGGCCUUGUUGCUAGAACAGUGGUUUCUUCUUUCACCUUUAAAACUUGAUGGACUUUGUUCCAUUUAUCUUAGAAAUUUUGUUGCCCUUGAGUCCGGUGGAUAUGUACUGGAGUAUGCUAUACUGGGUGAUUUAAUGGUGAUAAUGUUAAAUCUUGAUACUAGUUCUACCUUUUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
252
NEP:
91.97%
LE_num:
LEP:
6.57%
ME_num:
MEP:
1.46%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.95
Avg Expression:
2.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 7.53719178897083 | 0.0244255105265329 |
2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 7.01976996227687 | 0.0137319455078415 |