Source:
XR_003242641.1
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
484
Sequence:
ACGGCUACAAUCAUGUGGGUC
Length:
21
PHAS Gene Name:
LOC112939107
Chr:
Chr5
PHAS Transcript Annotation:
uncharacterized LOC112939107
PHAS Transcript Sequence:
AUUGAUAGAAGAAAAUUUAAUCAUGUACAUAGUGUUGAGUUUAUGUUUCACGCAUCAUAAAUCUUUUGCAGUUGCUCAAGUUGAGUAGUGAUUGUUGCGUGAUUCCACAAUACAUGUUGUUACAUGUCCUUUGUUUCUUGAGGAAGAAGAGAUUUUAUGAGACACGACCAGGCAACACAGUUCAUGUCACAUGCUUUAUAUGAUUGUAUCAUGGCAAAAAUUUACAGCUGGAAUUUUUGCAUCAGAAACUAAUUGAUACCAACCAUGUAGCUAAUGCAAGAAGUUCUGACGAGUGACGAUGCAUGUGGAACGUGCACAACUUUACUUGGUUCAGGUCACAUGGAAAGUUACAUUUAUCUUCAUCAAGUUCAUUCAACUCCAGAACAACCGACCAAAGGAUCUGAAUAUCUUGAGCAUCCAGUUGUGCUAGAAGAUCCAGAGAAGCAGAGGAAACAGAGGAAUUCUGCAAGGAAUGUGCGGUGUGACGGCUACAAUCAUGUGGGUCCAGCAGCUAGAAGUGAGGCAGGGGAAACGCUAUGAAGAUCUGUAUAUUAGCCACUGUUUACCUUCCAUCUAGUGAACUUUUGUACCCAAAAAGUUCAUGAAAUAUUCAUCAUCGAACUGCCCAUAGUAGAGACCACAUUGUGUCAGAAAGUACAGAAAUUAGUAAUAGAGCACUACAUUGUGUCUGAAAGUACAGAAAUUAGUAAUAGAGUUUCUGUGUUGUUGACCAUGGUUAAUUGAGAUCCUAGCAUGACAUAAUUUUUUACAUCCUGUAGCUAUAUAUAUAAAAGGAGUAUCAGGGCAAGAGAGAUGCAAGUAGAAAGAAAAGAGCGAUGCUGUCAUAUGAACGAGUUUGAUGGCUCUGUAUCUUCUAAAGUUACAGAAUGUUGGAUAAAUGAGAAAGGAUUGAAAGGCAUCGGUAUGACAAAGCACUGUCUGCACGAUGUUUAUUGGUUGAUUAAGUGACGCUGCAAGAAACAGGUCCAAUCCGAAGUAGGGACACGUUGCAUUGUCGUCAGGAGCUUUCUGGUUUCUCGUCCUCUACUCCUGUUUAUUGGAAUCCAACCAAACCAAGGGGUAUGAGAAAAUACUAUCUUCCGUUUGUUGAGGAUUUUUUAUCAUCAUCAUCAUAUUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
252
NEP:
91.97%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
6.57%
HE_num:
HEP:
1.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
1.00
Avg Expression:
7.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -8.50708236259677 | 9.54453083324587e-06 |
2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.14382286825505 | 0.0223882197066485 |