Source:
XR_001544388.2
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
722
Sequence:
AGAACUAGGAGAAAGAUGGGA
Length:
21
PHAS Gene Name:
LOC9267531
Chr:
Chr3
PHAS Transcript Annotation:
uncharacterized LOC9267531
PHAS Transcript Sequence:
GGAAGCUCACACGCUAGAGACCACUAGGCCAGCGCGAGCGCCCAGCUAUAGCCCAUCGAUCUCUUGGAAAAGCCUGAGAUCAAAUCCCAGCUUAACUCCCCAAAGAUUUCCUGACUCCAAAUCUCCAUCCGCUCCGCAGCUACCUUCUCCCCAUAUAUACACGCGCACUCCCUCCCCCCUCUCCAGCCUCCAUGACCCCUCCUCGCUCACCUUUCUCUCUUGCCUGAGCCAAGAGCUACACUUUCUAUAUCCACCACUUCACCGUGCAAACCCCAUGCACACGCCUUGACAGAAGCUGAGCUAGCUUCUCCUGCGUCGCUGCAAGCUGCUACUUUGGUUCGUGACUGAAAGCCAAAUGGAAGAUACGGAUCAGGAGCUAUGCACCGUUGCGGUGGAGAUGAUGAGUUCAGGAAAACUCAAGCCAUGUAGACACUUGUUGUUCUAUCAAGACUCCCUUCACCGAGAAGCAUCCAUAAAAAUGGUUCAUGUUUAGCAAUAGCACGGUGUUAUCCUAACUGAGCUUUUCUUCUAGCCACCGUCCACAUCCUUCUUCAAAACCUCAACAUCACUUUGUGUGGGAAUUAAAAGGAAUUGGUCUUCUUGACCUUGCAAGACCUUUUCUUGACCUUGUAAGACCCAACAUCGUUGUGUUGUUUUUCUUGUUUCUUAUUUUUCAAUUUCAUCCACCUCUUCUUUCUACCUCCCAUCUUUCUCCUAGUUCUAGAACUAGGAGAAAGAUGGGACCUCCUGAGCUGUAUUGAUCACUUUCUAUGUUAUUUUCUCGAUGUUUAAAAGAAAAUUAAUUUUGUUUAGCAAUAUACGAAGAGAUUGUGAAAUUCUAGUAUACCUGUAAAUUGUAAUAUUAUUGCUUGCGUGAUAUAAUUUGUAAUAUUAUUAUUGCUUGCGUGAUAUAAUGUAUUUCUGCAGUCAGAGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
86
NEP:
31.39%
LE_num:
LEP:
16.79%
ME_num:
MEP:
40.51%
HE_num:
HEP:
11.31%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.69
Avg Expression:
64.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -11.2798708160629 | 1.40427080936702e-07 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.26712823025781 | 0.0212130670046212 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.85481176589234 | 0.0121914346397649 |
| 4 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -2.74610404829118 | 2.19921049576733e-06 |
| 5 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | 2.4804987403852 | 2.95899787987854e-06 |