Source:
XR_001547319.2
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
655
Sequence:
GAUAGAAGGAAGAAAUGGAUGU
Length:
22
PHAS Gene Name:
LOC4326727
Chr:
Chr1
PHAS Transcript Annotation:
uncharacterized LOC4326727
PHAS Transcript Sequence:
GCUGAUCUGAAACGGUGACAAUCCAAGUGCACAAAAAACCUUCACCUACCGAGCUGCUUUCCACCAACCCUCCUCACAACACCCUUCCCCUUCCUCGAUCUUGAAUUUACCCAAUGCAGUCCUAGUGCUGCUGGUUGCUUUUGCAUCCUCUUCUACUGCAGUUGGUCUUGUUUCAGCUUCGUGGAAGCUAAUGGAGGACAAAGAUGAUAGAUUUUGCUACAACGGCAACAAAUAUCGAAAAGGCAAAGACGCAGUUGCCGUCAUGUUUGAGGCGAUCUGGUUUGAUGAUGAAGUAGCAUUCGACUUUCCCAUGGGCAUCUGUGCAACCAAAGCGUCACAUCAUGCUAGCAUUUGGAAGCCUUCCUAGUUCAUGAAUGGUGCUAUCCCGAUUGAGCUUUUUUUUAUCUGUCAUACUAUCCCUAUCUUCAGGUAAUCAAAUGCUAGACGUUCUUGAGUGCUAGAACAUUUUGUUCCGAGUACUUUGGAACGUUCUUGACCUUGCAAGGCUUCUCCCUGACCUUGCAAGAGUUGUCAAUUUCUACCAUCUCCUUGCCACACUUCUUGGCCCUUGUAUUCUCGCCAUCCCAAACCUUCCUUUCCCAUUUCCAAUGUUCAGCUGCAUCCUCCACGCUCACAUCCAUUUCUUCCUUCUAUCGAUAGAAGGAAGAAAUGGAUGUCAUGUUCUGCCAAAAAAAAAUGUUGUUGACAAGGUUAGAGUCAUGGAGAGCAGUACUACAUGUGUGAUUCUCAAGGGUCUUGUAUAUCAGAAGACUUUGCUAAUAGAAGAAGCUGAAAUAUUUAAUGUAUGUAUUUUAUAAGUUGUAAGAUUGCUAGUCACUUGAUUGAGCUAAAUAUUCCAUUGCUAUAUAUGGUUCACUCACCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
269
NEP:
98.18%
LE_num:
LEP:
1.09%
ME_num:
MEP:
0.73%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
1.00
Avg Expression:
1.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -8.33245837230557 | 0.015230269725113 |
2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -7.67930627467927 | 0.0421244591237042 |