Source:
XR_003242590.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
968
Sequence:
AACUUGGCGAUGGCAGGUUCA
Length:
21
PHAS Gene Name:
LOC112939092
Chr:
Chr5
PHAS Transcript Annotation:
uncharacterized LOC112939092
PHAS Transcript Sequence:
AGGUAGAAAUGACUAACAUGCUGAUUAACUAUAUGCUAUAUAUGACAUUGAAUCCUAAAUAUUCAUAGAUAACACACUGUAUUUCCCCUGCACUAAUACUAUACUACUAUACUAAAUAUUCUGAAAACAAAAUAGAGAGAAAGAUGAGGGGGGAGGAAAAAUAAAAAGGACAGAGAUUCCCCUGAUCCUGAAAGCCAGGCUAAAAGGGUUGGGACUUGGGAGCCACUUUGUCCCUAGUUUCAAUUCAAGGAGGCCCUCUGUGUCAAUCCAUUAGAUAUGCCACUACUCUCUGUUCUUUGGACUAGUAUAACUCUGCAUCCAGACGAGGGAGCAGCAGCCAGCAAGGAGAUCAGUGUGGAGCUGGACCUAAGCUUCGCAUGCAUAUAUGCAUGCUACCCUGCAUCCAUUUCUGAAACCUAGAGGAGUAAACUAGUUAUAGUACUGUACAUAGUGAUAUCAUCUCCUGUAAUAUGAUUCAAGAGAAGAUGUUUGUUUGGAAGCUGUCAAAAUAUGACAUACUGGAUGAUCAAAACCCUAUAUCUCCCAUCAGUAUCAACAACAGCGUAAGCAGUUUCUUCGGUUGCCACAGUGGCAAGAGGGAGGAAGAAACAUCAUCAUCCAUCAUGAUUUUAAUACAAGAUCCUCCUCAAACAGCAUUGUUUUACAUCAUACCUGAAAAAGUAGCUACGAAAUCGUUCCAUAUAGCAUUGCAAGUACAAGUAAGCAUUGUGAUGUUCUCGUAGCUUGCGAACCGGUGCUACCCCGACUGAGCUUUUCUUCUUCUAAAAACUUCUCCAACCACCAUACAUCUUUUCUGGUGCUUUAUUUGUGCUAGAAUUAAUAUUCUUGACCUUGUAAGGCCUUUUUCUUGACCUUGUAAGGCCCUCUCACAUCGUUUUCCAUCUCAUUAUGUACCUCGUGCAUCUCUUUCUUGAUAUCUACAAGAAUGAACCUGCCAUCGCCAAGUUAACUUGGCGAUGGCAGGUUCAUGUUCCCUUCUCCCUUCUAUCCCUCCUGAGCUAGCUGCACCAUCAUAGCCUUUUUAUGAGAUAAUCUCAAUUAAUGGCUAGUGUUUUUAGGCACUUGUGAGUUUCUCCCACAUCCUAGUAGUUAAUGCUACUUCUGGUCAUCCAUUGAUUUGCUCUUAUAUGCAAAAUAUAAAUGCAAUGGAAGCUUGUCUUUCUCAUUGAAGUUAUCACUCACCAAAUGGUGCUGAUCGAAAUUUGUAAUGAUGUAAUUUUGUAAUUCUCAUUUGAUUAAUGUGACAUUUCCUUCUUGCAACUUAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
260
NEP:
94.89%
LE_num:
LEP:
3.28%
ME_num:
MEP:
1.82%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
1.00
Avg Expression:
0.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -9.6295315922251 | 7.35134144859982e-06 |
| 2 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -9.8760470311064 | 2.25903955000198e-05 |