RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR1857	miRbase/PmiREN	/	Chr11	2734001	2734021	+	N/Y
osa-miR1428b	miRbase		Chr1	25390434	25390454	+	N/N
osa-miR1428c	miRbase		Chr2	2535117	2535137	+	N/N
osa-miR1428d	miRbase		Chr3	23077356	23077376	+	N/N
osa-miR1428e-5p	miRbase		Chr3	23076880	23076901	+	Y/N
Osa-miR1428e	miRbase/PmiREN	/	Chr3	23076951	23076971	+	Y/N
osa-miR1858a	miRbase		Chr9	13536656	13536676	+	Y/N
osa-miR1858b	miRbase		Chr9	13194082	13194102	+	Y/N
osa-miR1846a-5p	miRbase		Chr10	529306	529326	+	Y/N
osa-miR1846a-3p	miRbase		Chr10	529335	529355	+	Y/Y
osa-miR1846b-5p	miRbase		Chr11	27715881	27715901	-	Y/N
Osa-miR1846b	miRbase/PmiREN	/	Chr11	27715852	27715872	-	Y/Y
Osa-miR1859	miRbase/PmiREN	/	Chr1	673288	673309	-	Y/Y
osa-miR1860-5p	miRbase		Chr1	934510	934530	-	N/N
osa-miR1860-3p	miRbase		Chr1	934456	934477	-	N/N
osa-miR1861a	miRbase		Chr1	15049794	15049815	+	Y/N
Osa-miR1861b	miRbase/PmiREN	/	Chr2	20715979	20716000	+	Y/Y
osa-miR1861c	miRbase		Chr2	20716196	20716217	+	Y/N
osa-miR1861d	miRbase		Chr4	6536354	6536375	+	Y/N
osa-miR1861e	miRbase		Chr4	6536571	6536592	+	Y/N

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

Osa-miR1857

miRbase/PmiREN

Chr11