RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR3980b-5p	miRbase		none	none	none	none	N/N
osa-miR3980b-3p	miRbase		none	none	none	none	N/N
osa-miR812n-5p	miRbase		Chr8	14108258	14108281	-	Y/N
Osa-miR812n	miRbase/PmiREN	/	Chr8	14108083	14108106	-	Y/N
osa-miR812o-5p	miRbase		none	none	none	none	Y/N
osa-miR812o-3p	miRbase		none	none	none	none	N/N
osa-miR3981-5p	miRbase		Chr5	4302836	4302856	+	N/N
osa-miR3981-3p	miRbase		Chr5	4302897	4302917	+	N/N
Osa-miR2873b	miRbase/PmiREN	/	Chr2	18974876	18974896	+	N/N
osa-miR3982-5p	miRbase		Chr11	1384931	1384951	-	N/N
osa-miR3982-3p	miRbase		Chr11	1384745	1384765	-	Y/Y
osa-miR5071	miRbase		Chr8	4114070	4114090	-	N/N
osa-miR5072	miRbase		Chr6	17458738	17458759	-	N/N
osa-miR5073	miRbase		Chr8	19020505	19020527	+	Y/N
osa-miR5074	miRbase		Chr12	12674526	12674546	+	N/N
osa-miR5075	miRbase		Chr11	7878346	7878366	-	N/N
osa-miR5076	miRbase		Chr1	43208632	43208653	-	Y/N
osa-miR5077	miRbase		Chr3	14094764	14094782	+	N/N
osa-miR5078	miRbase		Chr5	21907872	21907892	-	N/N
osa-miR5079a	miRbase		Chr6	28181418	28181439	+	N/N

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

osa-miR3980b-5p

miRbase

none