RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR1439	miRbase		Chr12	10074240	10074260	+	N/N
osa-miR531b	miRbase		Chr1	833970	833989	-	Y/N
Osa-miR1846d	miRbase/PmiREN	/	Chr1	39637075	39637096	+	Y/N
osa-miR1846d-3p	miRbase		Chr1	39637151	39637170	+	Y/Y
osa-miR1847.1	miRbase		Chr1	20332894	20332914	+	Y/N
osa-miR1847.2	miRbase		Chr1	20332937	20332960	+	N/N
osa-miR1848	miRbase		Chr4	18131817	18131837	+	N/N
osa-miR1849	miRbase		Chr4	22224878	22224898	+	Y/N
osa-miR1850.1	miRbase		Chr5	26275302	26275322	-	Y/N
osa-miR1850.2	miRbase		Chr5	26275277	26275297	-	Y/N
osa-miR1850.3	miRbase		Chr5	26275246	26275267	-	Y/N
osa-miR1851	miRbase		Chr5	26049753	26049773	+	Y/N
Osa-miR1852	miRbase/PmiREN	/	Chr5	20761126	20761148	+	N/N
osa-miR1853-5p	miRbase		Chr8	3689146	3689169	-	N/N
osa-miR1853-3p	miRbase		Chr8	3689101	3689122	-	N/N
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
osa-miR1854-3p	miRbase		Chr8	7858374	7858395	-	N/N
osa-miR1855	miRbase		Chr11	21709050	21709070	+	N/N
Osa-miR1856	miRbase/PmiREN	/	Chr11	10376266	10376286	-	Y/Y
osa-miR1857-5p	miRbase		Chr11	2733912	2733932	+	N/N

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

osa-miR1439

miRbase

Chr12