Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
osa-miR6253_miRbase	145	52.92%	90	32.85%	39	14.23%	0	0.0%	MCR
osa-miR6254_miRbase	64	23.36%	90	32.85%	119	43.43%	1	0.36%	HCR
osa-miR6255_miRbase	181	66.06%	78	28.47%	15	5.47%	0	0.0%	MCR
osa-miR7692-3p_miRbase	77	28.1%	75	27.37%	122	44.53%	0	0.0%	MCR
osa-miR7692-5p_miRbase	181	66.06%	70	25.55%	23	8.39%	0	0.0%	MCR
osa-miR7693-3p_miRbase	52	18.98%	45	16.42%	175	63.87%	2	0.73%	HCR
osa-miR7693-5p_miRbase	66	24.09%	56	20.44%	152	55.47%	0	0.0%	MCR
osa-miR7694-3p_miRbase	36	13.14%	38	13.87%	194	70.8%	6	2.19%	HCR
osa-miR7694-5p_miRbase	66	24.09%	62	22.63%	141	51.46%	5	1.82%	HCR
osa-miR7695-3p_miRbase	145	52.92%	33	12.04%	88	32.12%	8	2.92%	HCR
osa-miR7695-5p_miRbase	112	40.88%	34	12.41%	124	45.26%	4	1.46%	HCR
osa-miR810a_miRbase	85	31.02%	80	29.2%	106	38.69%	3	1.09%	HCR
osa-miR810b.1_miRbase	7	2.55%	13	4.74%	170	62.04%	84	30.66%	HCR
osa-miR810b.2_miRbase	39	14.23%	41	14.96%	140	51.09%	54	19.71%	HCR
osa-miR812h_miRbase	0	0.0%	4	1.46%	132	48.18%	138	50.36%	HCR
osa-miR812k_miRbase	24	8.76%	21	7.66%	176	64.23%	53	19.34%	HCR
osa-miR812l_miRbase	24	8.76%	21	7.66%	176	64.23%	53	19.34%	HCR
osa-miR812n-5p_miRbase	7	2.55%	7	2.55%	222	81.02%	38	13.87%	HCR
osa-miR812o-3p_miRbase	62	22.63%	81	29.56%	131	47.81%	0	0.0%	MCR
osa-miR812o-5p_miRbase	70	25.55%	112	40.88%	92	33.58%	0	0.0%	MCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

osa-miR6253_miRbase

145

52.92%

32.85%

14.23%

0.0%

MCR

osa-miR6254_miRbase

23.36%

32.85%

119

43.43%

0.36%

HCR

osa-miR6255_miRbase

181

66.06%

28.47%

5.47%

0.0%

MCR

osa-miR7692-3p_miRbase

28.1%

27.37%

122

44.53%

0.0%

MCR

osa-miR7692-5p_miRbase

181

66.06%

25.55%

8.39%

0.0%

MCR

osa-miR7693-3p_miRbase

18.98%

16.42%

175

63.87%

0.73%

HCR

osa-miR7693-5p_miRbase

24.09%

20.44%

152

55.47%

0.0%

MCR

osa-miR7694-3p_miRbase

13.14%

13.87%

194

70.8%

2.19%

HCR

osa-miR7694-5p_miRbase

24.09%

22.63%

141

51.46%

1.82%

HCR

osa-miR7695-3p_miRbase

145

52.92%

12.04%

32.12%

2.92%

HCR

osa-miR7695-5p_miRbase

112

40.88%

12.41%

124

45.26%

1.46%

HCR

osa-miR810a_miRbase

31.02%

29.2%

106

38.69%

1.09%

HCR

osa-miR810b.1_miRbase

2.55%

4.74%

170

62.04%

30.66%

HCR

osa-miR810b.2_miRbase

14.23%

14.96%

140

51.09%

19.71%

HCR

osa-miR812h_miRbase

0.0%

1.46%

132

48.18%

138

50.36%

HCR

osa-miR812k_miRbase

8.76%

7.66%

176

64.23%

19.34%

HCR

osa-miR812l_miRbase

8.76%

7.66%

176

64.23%

19.34%

HCR

osa-miR812n-5p_miRbase

2.55%

222

81.02%

13.87%

HCR

osa-miR812o-3p_miRbase

22.63%

29.56%

131

47.81%

0.0%

MCR

osa-miR812o-5p_miRbase

25.55%

112

40.88%

33.58%

0.0%

MCR

miRNAs Expression Capacity