Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
osa-miR812q_miRbase	96	35.04%	42	15.33%	134	48.91%	2	0.73%	HCR
osa-miR812r_miRbase	100	36.5%	30	10.95%	140	51.09%	4	1.46%	HCR
osa-miR812s_miRbase	12	4.38%	22	8.03%	235	85.77%	5	1.82%	HCR
osa-miR812t_miRbase	20	7.3%	33	12.04%	195	71.17%	26	9.49%	HCR
osa-miR812u_miRbase	22	8.03%	34	12.41%	194	70.8%	24	8.76%	HCR
osa-miR814a_miRbase	17	6.2%	39	14.23%	217	79.2%	1	0.36%	HCR
osa-miR814b_miRbase	17	6.2%	39	14.23%	217	79.2%	1	0.36%	HCR
osa-miR814c_miRbase	32	11.68%	72	26.28%	170	62.04%	0	0.0%	MCR
osa-miR815a_miRbase	142	51.82%	88	32.12%	44	16.06%	0	0.0%	MCR
osa-miR816_miRbase	229	83.58%	44	16.06%	1	0.36%	0	0.0%	MCR
osa-miR817_miRbase	108	39.42%	107	39.05%	59	21.53%	0	0.0%	MCR
osa-miR818a_miRbase	221	80.66%	50	18.25%	3	1.09%	0	0.0%	MCR
osa-miR818f_miRbase	200	72.99%	26	9.49%	46	16.79%	2	0.73%	HCR
osa-miR820a_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR820b_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR820c_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR821a_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR
osa-miR821b_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR
osa-miR821c_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

osa-miR812q_miRbase

35.04%

15.33%

134

48.91%

0.73%

HCR

osa-miR812r_miRbase

100

36.5%

10.95%

140

51.09%

1.46%

HCR

osa-miR812s_miRbase

4.38%

8.03%

235

85.77%

1.82%

HCR

osa-miR812t_miRbase

7.3%

12.04%

195

71.17%

9.49%

HCR

osa-miR812u_miRbase

8.03%

12.41%

194

70.8%

8.76%

HCR

osa-miR814a_miRbase

6.2%

14.23%

217

79.2%

0.36%

HCR

osa-miR814b_miRbase

6.2%

14.23%

217

79.2%

0.36%

HCR

osa-miR814c_miRbase

11.68%

26.28%

170

62.04%

0.0%

MCR

osa-miR815a_miRbase

142

51.82%

32.12%

16.06%

0.0%

MCR

osa-miR816_miRbase

229

83.58%

16.06%

0.36%

0.0%

MCR

osa-miR817_miRbase

108

39.42%

107

39.05%

21.53%

0.0%

MCR

osa-miR818a_miRbase

221

80.66%

18.25%

1.09%

0.0%

MCR

osa-miR818f_miRbase

200

72.99%

9.49%

16.79%

0.73%

HCR

osa-miR820a_miRbase

1.09%

0.73%

9.49%

243

88.69%

HCR

osa-miR820b_miRbase

1.09%

0.73%

9.49%

243

88.69%

HCR

osa-miR820c_miRbase

1.09%

0.73%

9.49%

243

88.69%

HCR

osa-miR821a_miRbase

226

82.48%

10.95%

6.57%

0.0%

MCR

osa-miR821b_miRbase

226

82.48%

10.95%

6.57%

0.0%

MCR

osa-miR821c_miRbase

226

82.48%

10.95%

6.57%

0.0%

MCR

miRNAs Expression Capacity