Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR11339i_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339j_PmiREN	177	64.6%	76	27.74%	21	7.66%	0	0.0%	MCR
Osa-miR11339k_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339l_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339m_PmiREN	102	37.23%	75	27.37%	91	33.21%	6	2.19%	HCR
Osa-miR11339n_PmiREN	105	38.32%	76	27.74%	87	31.75%	6	2.19%	HCR
Osa-miR11339o_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339p_PmiREN	20	7.3%	58	21.17%	195	71.17%	1	0.36%	HCR
Osa-miR11339q_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339r_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339s_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339t_PmiREN	71	25.91%	67	24.45%	136	49.64%	0	0.0%	MCR
Osa-miR11339u_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339v_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339w_PmiREN	155	56.57%	80	29.2%	39	14.23%	0	0.0%	MCR
Osa-miR11339x_PmiREN	138	50.36%	73	26.64%	63	22.99%	0	0.0%	MCR
Osa-miR11339y_PmiREN	155	56.57%	72	26.28%	47	17.15%	0	0.0%	MCR
Osa-miR11339z_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11341_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11342a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

Osa-miR11339i_PmiREN

7.66%

22.26%

191

69.71%

0.36%

HCR

Osa-miR11339j_PmiREN

177

64.6%

27.74%

7.66%

0.0%

MCR

Osa-miR11339k_PmiREN

7.66%

22.26%

191

69.71%

0.36%

HCR

Osa-miR11339l_PmiREN

141

51.46%

32.12%

16.42%

0.0%

MCR

Osa-miR11339m_PmiREN

102

37.23%

27.37%

33.21%

2.19%

HCR

Osa-miR11339n_PmiREN

105

38.32%

27.74%

31.75%

2.19%

HCR

Osa-miR11339o_PmiREN

141

51.46%

32.12%

16.42%

0.0%

MCR

Osa-miR11339p_PmiREN

7.3%

21.17%

195

71.17%

0.36%

HCR

Osa-miR11339q_PmiREN

33.94%

31.75%

34.31%

0.0%

MCR

Osa-miR11339r_PmiREN

33.94%

31.75%

34.31%

0.0%

MCR

Osa-miR11339s_PmiREN

33.94%

31.75%

34.31%

0.0%

MCR

Osa-miR11339t_PmiREN

25.91%

24.45%

136

49.64%

0.0%

MCR

Osa-miR11339u_PmiREN

28.1%

16.42%

139

50.73%

4.74%

HCR

Osa-miR11339v_PmiREN

143

52.19%

32.48%

15.33%

0.0%

MCR

Osa-miR11339w_PmiREN

155

56.57%

29.2%

14.23%

0.0%

MCR

Osa-miR11339x_PmiREN

138

50.36%

26.64%

22.99%

0.0%

MCR

Osa-miR11339y_PmiREN

155

56.57%

26.28%

17.15%

0.0%

MCR

Osa-miR11339z_PmiREN

143

52.19%

32.48%

15.33%

0.0%

MCR

Osa-miR11341_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

Osa-miR11342a_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

miRNAs Expression Capacity