Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR11337p_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337q_PmiREN	37	13.5%	69	25.18%	168	61.31%	0	0.0%	MCR
Osa-miR11337r_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337s_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337t_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11339a_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339aa_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339ab_PmiREN	149	54.38%	82	29.93%	43	15.69%	0	0.0%	MCR
Osa-miR11339ac_PmiREN	108	39.42%	107	39.05%	59	21.53%	0	0.0%	MCR
Osa-miR11339ad_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ae_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339af_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ag_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339b_PmiREN	155	56.57%	87	31.75%	32	11.68%	0	0.0%	MCR
Osa-miR11339c_PmiREN	115	41.97%	105	38.32%	54	19.71%	0	0.0%	MCR
Osa-miR11339d_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339e_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339f_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339g_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339h_PmiREN	60	21.9%	64	23.36%	150	54.74%	0	0.0%	MCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

Osa-miR11337p_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337q_PmiREN

13.5%

25.18%

168

61.31%

0.0%

MCR

Osa-miR11337r_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

Osa-miR11337s_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

Osa-miR11337t_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

Osa-miR11339a_PmiREN

28.1%

16.42%

139

50.73%

4.74%

HCR

Osa-miR11339aa_PmiREN

143

52.19%

32.48%

15.33%

0.0%

MCR

Osa-miR11339ab_PmiREN

149

54.38%

29.93%

15.69%

0.0%

MCR

Osa-miR11339ac_PmiREN

108

39.42%

107

39.05%

21.53%

0.0%

MCR

Osa-miR11339ad_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339ae_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339af_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339ag_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339b_PmiREN

155

56.57%

31.75%

11.68%

0.0%

MCR

Osa-miR11339c_PmiREN

115

41.97%

105

38.32%

19.71%

0.0%

MCR

Osa-miR11339d_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339e_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339f_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339g_PmiREN

109

39.78%

105

38.32%

21.9%

0.0%

MCR

Osa-miR11339h_PmiREN

21.9%

23.36%

150

54.74%

0.0%

MCR

miRNAs Expression Capacity