RiceNCexp:Browse

phasiRNAs Basic Information

We used the phasiRNA analysis tool PhasiRNAnalyzer to predict the phasiRNA of 307 rice samples (including different tissues and treatments), and integrated the prediction results of the 355 samples to obtain the mature phasiRNAs.

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total numbers: 9239

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Name	PHAS gene	Strand on PHAS gene	Start on PHAS gene	Gene	Chromosome	Strand	Annotation	DE/TSE
Osa-phasi12g1523	XM_026022265.1	-	2061	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1524	XM_026022265.1	-	2062	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1525	XM_026022265.1	+	2064	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1526	XM_026022265.1	-	2083	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1527	XM_026022265.1	+	2085	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1528	XM_026022265.1	+	2105	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1529	XM_026022265.1	+	2106	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1530	XM_026022265.1	+	2127	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1531	XM_026022265.1	-	2145	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	Y/N
Osa-phasi12g1532	XM_026022265.1	-	2146	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1533	XM_026022265.1	+	2148	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1534	XM_026022265.1	+	2169	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1535	XM_026022265.1	-	2188	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1536	XM_026022265.1	-	2813	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1537	XM_026022265.1	-	2834	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1538	XM_026022265.1	-	2897	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1539	XM_026022265.1	+	2920	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1540	XM_026022265.1	-	2939	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1541	XM_026022265.1	+	2941	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1542	XM_026022265.1	+	2962	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1543	XM_026022265.1	-	3023	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1544	XM_026022265.1	-	3578	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1545	XM_026022265.1	-	3620	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1546	XM_026022265.1	-	3641	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1547	XM_026022265.1	-	3683	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/N
Osa-phasi12g1548	XM_026022265.1	-	3704	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1549	XM_026022265.1	+	3706	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1550	XM_026022265.1	-	3746	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1551	XM_026022265.1	-	3767	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1552	XM_026022265.1	+	3769	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1553	XM_026022265.1	+	3790	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1554	XM_026022265.1	-	3809	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1555	XM_026022265.1	-	3830	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1556	XM_026022265.1	+	3832	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1557	XM_026022265.1	+	3853	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1558	XM_026022265.1	-	3872	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X4	N/Y
Osa-phasi12g1559	XR_003240124.1	+	1385	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/Y
Osa-phasi12g1560	XR_003240124.1	-	1404	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/N
Osa-phasi12g1561	XR_003240124.1	-	1425	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/Y
Osa-phasi12g1562	XR_003240124.1	+	1427	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/Y
Osa-phasi12g1563	XR_003240124.1	+	1448	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/N
Osa-phasi12g1564	XR_003240124.1	-	1467	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X2	N/N
Osa-phasi12g1565	XR_003240125.1	+	1468	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/Y
Osa-phasi12g1566	XR_003240125.1	-	1487	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/N
Osa-phasi12g1567	XR_003240125.1	-	1508	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/Y
Osa-phasi12g1568	XR_003240125.1	+	1510	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/Y
Osa-phasi12g1569	XR_003240125.1	+	1531	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/N
Osa-phasi12g1570	XR_003240125.1	-	1550	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X3	N/N
Osa-phasi12g1571	XR_003240123.1	+	1996	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1572	XR_003240123.1	-	2078	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1573	XR_003240123.1	-	2099	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1574	XR_003240123.1	+	2101	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1575	XR_003240123.1	-	2141	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1576	XR_003240123.1	+	2143	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1577	XR_003240123.1	-	2162	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1578	XR_003240123.1	+	2164	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1579	XR_003240123.1	-	2183	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1580	XR_003240123.1	+	2185	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1581	XR_003240123.1	-	2204	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	Y/Y
Osa-phasi12g1582	XR_003240123.1	+	2206	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1583	XR_003240123.1	-	2225	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/N
Osa-phasi12g1584	XR_003240123.1	-	2246	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1585	XR_003240123.1	+	2248	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1586	XR_003240123.1	-	2267	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1587	XR_003240123.1	+	2269	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1588	XR_003240123.1	-	2288	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1589	XR_003240123.1	+	2290	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	Y/Y
Osa-phasi12g1590	XR_003240123.1	-	2309	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	Y/Y
Osa-phasi12g1591	XR_003240123.1	+	2311	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1592	XR_003240123.1	-	2330	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1593	XR_003240123.1	+	2332	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1594	XR_003240123.1	-	2351	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	N/Y
Osa-phasi12g1595	XR_003240123.1	+	2353	LOC9269040	Chr12	-	uncharacterized LOC9269040, transcript variant X1	Y/Y
Osa-phasi12g1596	XR_003239852.1	-	349	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1597	XR_003239852.1	+	351	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1598	XR_003239852.1	-	370	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1599	XR_003239852.1	-	391	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1600	XR_003239852.1	+	393	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1601	XR_003239852.1	-	412	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1602	XR_003239852.1	+	414	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1603	XR_003239852.1	+	435	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1604	XR_003239852.1	-	454	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1605	XR_003239852.1	-	475	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1606	XR_003239852.1	-	496	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1607	XR_003239852.1	+	498	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1608	XR_003239852.1	+	519	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1609	XR_003239852.1	-	538	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1610	XR_003239852.1	+	540	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1611	XR_003239852.1	+	561	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1612	XR_003239852.1	+	582	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1613	XR_003239852.1	-	601	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1614	XR_003239852.1	+	603	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1615	XR_003239852.1	-	643	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/Y
Osa-phasi12g1616	XR_003239852.1	-	664	LOC112937339	Chr12	+	uncharacterized LOC112937339	N/N
Osa-phasi12g1617	XM_026021815.1	+	3036	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/N
Osa-phasi12g1618	XM_026021815.1	+	3057	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/N
Osa-phasi12g1619	XM_026021815.1	-	3097	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/N
Osa-phasi12g1620	XM_026021815.1	-	3118	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/Y
Osa-phasi12g1621	XM_026021815.1	-	3181	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/N
Osa-phasi12g1622	XM_026021815.1	+	3183	LOC107279693	Chr12	-	uncharacterized LOC107279693	N/N