Osa-phasi12g1589


Function Link


Basic Info

Source:

XR_003240123.1

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

2290

Sequence:

CCAUAUCAGCACUGCGAUUGC

Length:

21

PHAS Gene Name:

LOC9269040

Chr:

Chr12

PHAS Transcript Annotation:

uncharacterized LOC9269040, transcript variant X1

PHAS Transcript Sequence:

UUCCUCUCUCCCAAACACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGACGACGAGGAGGAAGAUGGCGGCGGCGCAGCCGCCAUUGCCGUGGGGGGACCUCCCGGCGGACCUGCUGGGCCUCGUGCUCCUCCGCCUCCCGUCCCUCCCCGACCGCGUCCGCCUCCGCGCCGUCUGCCGCUCCUGGCGCGCGGGCGCCGCGCGGGGUCGCCACCCGCGGCUGCCCCCGCCGCUGCCGUGGCUCGCCCUCCGCGACGGGGGCCUCGUCGACCUCGACGGCGAGCCCAUCCGCUGCCCCACCCCCAUCCCCCGCCACGGCGUCGUCGGCCACCUCGCCGUCGACAACCUCGCCUUCCUGAUACACCGCGACGGCGGCUGCUCCCUUCUGAACCCCCUCUCCUCGUCUGCUUCAGCGGCGACGGCGGCGAUCACGCCUCUCCCAUGGCUGAACCUCGCCGCCGUGGACGGAGCGAUCGGCCAGCCGGGGGUAUUCAUCGGGAUCGGGGCCUACGUCAACGUGUACUCCAAAUCGGUCCUCUCCUCGCCGCUCGAUUCGUCGCCGGAUCCCCUCGUCGCCGUCGUCACAUCGGGCGGGAGGCACGUCGCCGUCGCCCCUUGCAAGCGGCGAGGCGUGGUCACCAUCGUCUCCGGCCUCAUGGCGCCACAGAUUCCCGGACUGAAUCCUACUCGGUUCUCCGACAUUGCGUUCUUGGGUGGAAACCUCUACACGCUCACCAAUGCAGAAGGGCUCCUUGUUCUUGAUCUCGGCAGCAAUGGCGUCGACGAUCCACCGAACGCGUCGCAUCGUCGGUGCAUCGCCGAUGAUCCCAACCAGCAUGAGUAUUACAUCGAUGGGAGCACUAAGAACAAGUCUUUGGUGCUGAGAUACCUGGUGGGUUCCAAUGGCAGGCUGUUGAUGGUGAGGAGGUGGAUGAACUGUCGGCAGCAGUAUUACGCGGGUGACAUGGACAAGACGCGGGGAUUCGAGGUCUUUGCGGCGGUAAUCUCUGAUGGCCAUGGCCAGUGGGUGAAGGUGGACAGCUUGGGUGACCAGGCAAUCUUCCUUAGUUCAGAGUGCUCCAAGUCUGUCACUGCUAGCCAAUGUGCAGAUGGAAUUCAGCAAGAUUGUAUCUACUUCAUGCAUAGGAUCUACGACAAUCCGACGAAAGAGUGCCACGGCCCAUGUGUUGAUCCUCUUGGUGACUCUGGCGUGUACAACAUGAGAGAUGGGACAAUCAACCUUUUGCGGCCCAGGGCGGUGAUGUCUGAGCUGCGCUGGAAACGCCAGUAUCUGACUUGGUUCUUCCCUUCUGAUGAGUAAUGGUAACUCCUUUCUAAGCUGAACAUGUUGCUCUGGUCUGGAAUAUUGGUAUGGUCGAUAUGUAGCCAACUAUGCAGAUGUUAAAAUCCUUUUCAUGGAUGAACGAAUGUUGAAAGCUGUGCAAAAUUUAGAAUCACUGUGAUGGCUAUAAAUUUUCCUUGCAAGCUAUGAAAAAUAUAUUGCCUUCAAGCGGUUAGGUUAAUAGUUGGUGUGCAAGAAAUGGCUAAAAUUUGAUGCAUUGAACAUUCAUCAGUCCUGAAUGAAAAUUUAAGUAUGUCUUCAUCUGAAGGAAAAUGCAUUGAAUGUCCUGCUGAAAUACUGAUAUUUAGAUGGCUUAACAGCCCUAGGAGGAUCGAUCUGCAUCUGUCCAUGUGUUUUACAUUGCCUAAAACAUUUUUCUUCCCGCAAUAAGUGCAACGAUGAAAAACAUGAUCAAAAAAAUCAUAGCGCUGUACUUUCACUCCCGUAGUUUCUUCUGAACUAUUGUUCAACUGGAAGCAUCAUAUGCUGUAAAUAGUCCAGCUGGAAGGCUUCAAUGGACCAAAAGGGAAUGCAUAUCUGCAAAUAAUAUCUUUACCACUAUACGAUUCCAUGCAAUCACUAGUCCAGAAAAUACAUGCAGUACUGUUCAAUUGAAAUUGAGUAUUAUUGUCGUCAAAUUAUAUUGAAAAACCUUGAUCGGCAAACCAAAUUCCAGAAAGGAUUUUCAAACAUCAUUUUAGCCCCUAGGCAAAAUUACUGAUCUCCCUUAACCAAAAAUCCUUCUUAUUUUUCUUUUCUAAAUAAGUUCAGAGCUCUAUUGGCUAGACACCUCUAAAAGAGGACUUCUAGAUGCUGAUGUCCAUGCGGACAUAGCAGAAUGAGCUGAAGCCCUAGCGCCCGCUAAGUCCAGUACUUCUGCCAACGCCCACAGCCAGCUGCAUGUAUGGAACAUUAGAUCUCUCAGCCAGAUCUUUACCCCUAAGCGGCCAUAUCAGCACUGCGAUUGCAGUUCAAUGCAACACCUGCCACAGUCAUAUUCUUCCCUCGUAACAGAAGAACUCCUGAUGCCUCCUACGCCUACAAUAGCAACCCAAUUGGCCUAGCGUCAUGAGCCUUUCAUUUAUCUCUCUCUUGCUGUCAGCUUGUAGCACUUGUGCUCGUUUGUCUAUUCUUAUAUGCAGCAAAAAGAUACACAAAAUAGGAUUGCCUUCAGAUAAUCAGGCCGGCGGUCAGUGAAGAAGAAAUGGGUAGGUUCUAACUACAAUUUUUUAAAAUUUUGUUUCAUUAUGUACUGGCCAAAUUAUUAAUUAAUCGUAUGUCUUAAUCUAAAUGAAAAUGUAUUGAACCUUAUUAAUUGUCUCCUUUCUAUUCAGUCCACCGAAUGCUAGGUAGCUCUAGAAUGUUCUUAGUUAGUUUUGAAGGAUAAUAUGGCCAUUUCAUGGCAAGCAAGUGAUUAGCUAAAUAUGCAUACUAUGGUCAAAAGUGAUAACUAAACGUGAACAGAGGAAGUAACAAUUUGCAUGGCAUUUGAGAUGUUCACGCUUUAGCUCAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

227

NEP:

82.85%

LE_num:

2

LEP:

0.73%

ME_num:

9

MEP:

3.28%

HE_num:

36

HEP:

13.14%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.96

Avg Expression:

141.97


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17-8.053932258383770.00208492768070602