Source:
XR_003240123.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
2204
Sequence:
CGGGCGCUAGGGCUUCAGCUC
Length:
21
PHAS Gene Name:
LOC9269040
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC9269040, transcript variant X1
PHAS Transcript Sequence:
UUCCUCUCUCCCAAACACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGACGACGAGGAGGAAGAUGGCGGCGGCGCAGCCGCCAUUGCCGUGGGGGGACCUCCCGGCGGACCUGCUGGGCCUCGUGCUCCUCCGCCUCCCGUCCCUCCCCGACCGCGUCCGCCUCCGCGCCGUCUGCCGCUCCUGGCGCGCGGGCGCCGCGCGGGGUCGCCACCCGCGGCUGCCCCCGCCGCUGCCGUGGCUCGCCCUCCGCGACGGGGGCCUCGUCGACCUCGACGGCGAGCCCAUCCGCUGCCCCACCCCCAUCCCCCGCCACGGCGUCGUCGGCCACCUCGCCGUCGACAACCUCGCCUUCCUGAUACACCGCGACGGCGGCUGCUCCCUUCUGAACCCCCUCUCCUCGUCUGCUUCAGCGGCGACGGCGGCGAUCACGCCUCUCCCAUGGCUGAACCUCGCCGCCGUGGACGGAGCGAUCGGCCAGCCGGGGGUAUUCAUCGGGAUCGGGGCCUACGUCAACGUGUACUCCAAAUCGGUCCUCUCCUCGCCGCUCGAUUCGUCGCCGGAUCCCCUCGUCGCCGUCGUCACAUCGGGCGGGAGGCACGUCGCCGUCGCCCCUUGCAAGCGGCGAGGCGUGGUCACCAUCGUCUCCGGCCUCAUGGCGCCACAGAUUCCCGGACUGAAUCCUACUCGGUUCUCCGACAUUGCGUUCUUGGGUGGAAACCUCUACACGCUCACCAAUGCAGAAGGGCUCCUUGUUCUUGAUCUCGGCAGCAAUGGCGUCGACGAUCCACCGAACGCGUCGCAUCGUCGGUGCAUCGCCGAUGAUCCCAACCAGCAUGAGUAUUACAUCGAUGGGAGCACUAAGAACAAGUCUUUGGUGCUGAGAUACCUGGUGGGUUCCAAUGGCAGGCUGUUGAUGGUGAGGAGGUGGAUGAACUGUCGGCAGCAGUAUUACGCGGGUGACAUGGACAAGACGCGGGGAUUCGAGGUCUUUGCGGCGGUAAUCUCUGAUGGCCAUGGCCAGUGGGUGAAGGUGGACAGCUUGGGUGACCAGGCAAUCUUCCUUAGUUCAGAGUGCUCCAAGUCUGUCACUGCUAGCCAAUGUGCAGAUGGAAUUCAGCAAGAUUGUAUCUACUUCAUGCAUAGGAUCUACGACAAUCCGACGAAAGAGUGCCACGGCCCAUGUGUUGAUCCUCUUGGUGACUCUGGCGUGUACAACAUGAGAGAUGGGACAAUCAACCUUUUGCGGCCCAGGGCGGUGAUGUCUGAGCUGCGCUGGAAACGCCAGUAUCUGACUUGGUUCUUCCCUUCUGAUGAGUAAUGGUAACUCCUUUCUAAGCUGAACAUGUUGCUCUGGUCUGGAAUAUUGGUAUGGUCGAUAUGUAGCCAACUAUGCAGAUGUUAAAAUCCUUUUCAUGGAUGAACGAAUGUUGAAAGCUGUGCAAAAUUUAGAAUCACUGUGAUGGCUAUAAAUUUUCCUUGCAAGCUAUGAAAAAUAUAUUGCCUUCAAGCGGUUAGGUUAAUAGUUGGUGUGCAAGAAAUGGCUAAAAUUUGAUGCAUUGAACAUUCAUCAGUCCUGAAUGAAAAUUUAAGUAUGUCUUCAUCUGAAGGAAAAUGCAUUGAAUGUCCUGCUGAAAUACUGAUAUUUAGAUGGCUUAACAGCCCUAGGAGGAUCGAUCUGCAUCUGUCCAUGUGUUUUACAUUGCCUAAAACAUUUUUCUUCCCGCAAUAAGUGCAACGAUGAAAAACAUGAUCAAAAAAAUCAUAGCGCUGUACUUUCACUCCCGUAGUUUCUUCUGAACUAUUGUUCAACUGGAAGCAUCAUAUGCUGUAAAUAGUCCAGCUGGAAGGCUUCAAUGGACCAAAAGGGAAUGCAUAUCUGCAAAUAAUAUCUUUACCACUAUACGAUUCCAUGCAAUCACUAGUCCAGAAAAUACAUGCAGUACUGUUCAAUUGAAAUUGAGUAUUAUUGUCGUCAAAUUAUAUUGAAAAACCUUGAUCGGCAAACCAAAUUCCAGAAAGGAUUUUCAAACAUCAUUUUAGCCCCUAGGCAAAAUUACUGAUCUCCCUUAACCAAAAAUCCUUCUUAUUUUUCUUUUCUAAAUAAGUUCAGAGCUCUAUUGGCUAGACACCUCUAAAAGAGGACUUCUAGAUGCUGAUGUCCAUGCGGACAUAGCAGAAUGAGCUGAAGCCCUAGCGCCCGCGGGCGCUAGGGCUUCAGCUCACGCCCACAGCCAGCUGCAUGUAUGGAACAUUAGAUCUCUCAGCCAGAUCUUUACCCCUAAGCGGCCAUAUCAGCACUGCGAUUGCAGUUCAAUGCAACACCUGCCACAGUCAUAUUCUUCCCUCGUAACAGAAGAACUCCUGAUGCCUCCUACGCCUACAAUAGCAACCCAAUUGGCCUAGCGUCAUGAGCCUUUCAUUUAUCUCUCUCUUGCUGUCAGCUUGUAGCACUUGUGCUCGUUUGUCUAUUCUUAUAUGCAGCAAAAAGAUACACAAAAUAGGAUUGCCUUCAGAUAAUCAGGCCGGCGGUCAGUGAAGAAGAAAUGGGUAGGUUCUAACUACAAUUUUUUAAAAUUUUGUUUCAUUAUGUACUGGCCAAAUUAUUAAUUAAUCGUAUGUCUUAAUCUAAAUGAAAAUGUAUUGAACCUUAUUAAUUGUCUCCUUUCUAUUCAGUCCACCGAAUGCUAGGUAGCUCUAGAAUGUUCUUAGUUAGUUUUGAAGGAUAAUAUGGCCAUUUCAUGGCAAGCAAGUGAUUAGCUAAAUAUGCAUACUAUGGUCAAAAGUGAUAACUAAACGUGAACAGAGGAAGUAACAAUUUGCAUGGCAUUUGAGAUGUUCACGCUUUAGCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
224
NEP:
81.75%
LE_num:
LEP:
1.46%
ME_num:
MEP:
3.65%
HE_num:
HEP:
13.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.95
Avg Expression:
149.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.12042094224042 | 0.0267955243153171 |