RiceNCexp:Browse

phasiRNAs Basic Information

We used the phasiRNA analysis tool PhasiRNAnalyzer to predict the phasiRNA of 307 rice samples (including different tissues and treatments), and integrated the prediction results of the 355 samples to obtain the mature phasiRNAs.

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total numbers: 9239

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Name	PHAS gene	Strand on PHAS gene	Start on PHAS gene	Gene	Chromosome	Strand	Annotation	DE/TSE
Osa-phasi12g1823	XM_015764839.2	+	752	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1824	XM_015764839.2	+	772	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1825	XM_015764839.2	+	773	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1826	XM_015764839.2	+	793	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1827	XM_015764839.2	+	794	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1828	XM_015764839.2	+	814	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1829	XM_015764839.2	+	815	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1830	XM_015764839.2	+	835	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1831	XM_015764839.2	+	836	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1832	XM_015764839.2	+	856	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1833	XM_015764839.2	+	857	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1834	XM_015764839.2	+	877	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/Y
Osa-phasi12g1835	XM_015764839.2	+	878	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1836	XM_015764839.2	+	1524	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1837	XM_015764839.2	+	1546	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1838	XM_015764839.2	+	1563	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1839	XM_015764839.2	+	1566	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1840	XM_015764839.2	+	1567	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1841	XM_015764839.2	+	1568	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1842	XM_015764839.2	+	1584	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1843	XM_015764839.2	+	1588	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1844	XM_015764839.2	+	1589	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1845	XM_015764839.2	+	1605	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1846	XM_015764839.2	+	1608	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1847	XM_015764839.2	+	1609	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1848	XM_015764839.2	+	1610	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1849	XM_015764839.2	+	1626	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1850	XM_015764839.2	+	1629	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1851	XM_015764839.2	+	1630	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1852	XM_015764839.2	+	1631	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1853	XM_015764839.2	+	1647	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1854	XM_015764839.2	+	1650	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1855	XM_015764839.2	+	1651	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1856	XM_015764839.2	+	1652	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/Y
Osa-phasi12g1857	XM_015764839.2	-	1666	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1858	XM_015764839.2	+	1668	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1859	XM_015764839.2	+	1671	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1860	XM_015764839.2	+	1672	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1861	XM_015764839.2	+	1673	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1862	XM_015764839.2	+	1689	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1863	XM_015764839.2	+	1692	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1864	XM_015764839.2	+	1693	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1865	XM_015764839.2	+	1694	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1866	XM_015764839.2	+	1713	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1867	XM_015764839.2	+	1714	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/N
Osa-phasi12g1868	XM_015764839.2	+	1734	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1869	XM_015764839.2	+	1735	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	Y/Y
Osa-phasi12g1870	XM_015764839.2	+	1736	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/Y
Osa-phasi12g1871	XM_015764839.2	+	1756	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1872	XM_015764839.2	+	1757	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X1	N/N
Osa-phasi12g1873	XM_015764842.2	+	625	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1874	XM_015764842.2	+	626	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1875	XM_015764842.2	+	646	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1876	XM_015764842.2	+	647	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1877	XM_015764842.2	+	667	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/Y
Osa-phasi12g1878	XM_015764842.2	+	668	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/Y
Osa-phasi12g1879	XM_015764842.2	+	688	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1880	XM_015764842.2	+	689	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/Y
Osa-phasi12g1881	XM_015764842.2	+	709	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1882	XM_015764842.2	+	710	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1883	XM_015764842.2	+	730	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1884	XM_015764842.2	+	731	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/Y
Osa-phasi12g1885	XM_015764842.2	+	751	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1886	XM_015764842.2	+	752	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1887	XM_015764842.2	+	772	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1888	XM_015764842.2	+	773	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1889	XM_015764842.2	+	793	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1890	XM_015764842.2	+	794	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1891	XM_015764842.2	+	814	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1892	XM_015764842.2	+	815	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1893	XM_015764842.2	+	835	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1894	XM_015764842.2	+	836	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1895	XM_015764842.2	+	856	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/Y
Osa-phasi12g1896	XM_015764842.2	+	857	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1897	XM_015764842.2	+	877	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/Y
Osa-phasi12g1898	XM_015764842.2	+	878	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1899	XM_015764842.2	+	1518	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1900	XM_015764842.2	+	1540	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1901	XM_015764842.2	+	1557	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1902	XM_015764842.2	+	1560	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1903	XM_015764842.2	+	1561	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1904	XM_015764842.2	+	1562	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1905	XM_015764842.2	+	1578	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1906	XM_015764842.2	+	1582	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1907	XM_015764842.2	+	1583	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1908	XM_015764842.2	+	1599	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1909	XM_015764842.2	+	1602	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1910	XM_015764842.2	+	1603	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1911	XM_015764842.2	+	1604	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1912	XM_015764842.2	+	1620	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1913	XM_015764842.2	+	1623	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1914	XM_015764842.2	+	1624	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1915	XM_015764842.2	+	1625	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1916	XM_015764842.2	+	1641	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1917	XM_015764842.2	+	1644	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/Y
Osa-phasi12g1918	XM_015764842.2	+	1645	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/N
Osa-phasi12g1919	XM_015764842.2	+	1646	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/Y
Osa-phasi12g1920	XM_015764842.2	-	1660	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1921	XM_015764842.2	+	1662	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	N/N
Osa-phasi12g1922	XM_015764842.2	+	1665	LOC4352810	Chr12	-	uncharacterized LOC4352810, transcript variant X2	Y/Y