RiceNCexp:Browse

phasiRNAs Basic Information

We used the phasiRNA analysis tool PhasiRNAnalyzer to predict the phasiRNA of 307 rice samples (including different tissues and treatments), and integrated the prediction results of the 355 samples to obtain the mature phasiRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 9239

rows per page

Name	PHAS gene	Strand on PHAS gene	Start on PHAS gene	Gene	Chromosome	Strand	Annotation	DE/TSE
Osa-phasi12g0423	XR_003240118.1	+	1309	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0424	XR_003240118.1	-	1349	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0425	XR_003240118.1	+	1351	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0426	XR_003240118.1	-	1370	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0427	XR_003240118.1	+	1372	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0428	XR_003240118.1	-	1391	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0429	XR_003240118.1	+	1414	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0430	XR_003240118.1	+	1456	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0431	XR_003240118.1	+	1477	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0432	XR_003240118.1	-	1496	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0433	XR_003240118.1	+	1519	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0434	XR_003240118.1	-	1559	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0435	XR_003240118.1	+	1561	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0436	XR_003240118.1	+	1603	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0437	XR_003240118.1	-	1622	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0438	XR_003240118.1	+	1624	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0439	XR_003240118.1	+	1645	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0440	XR_003240118.1	+	1666	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/Y
Osa-phasi12g0441	XR_003240118.1	+	1687	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0442	XR_003240118.1	+	1729	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0443	XR_003240118.1	-	1748	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0444	XR_003240118.1	-	1769	LOC112937479	Chr12	+	uncharacterized LOC112937479	N/N
Osa-phasi12g0445	XR_003239902.1	+	224	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0446	XR_003239902.1	-	264	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0447	XR_003239902.1	-	285	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0448	XR_003239902.1	+	287	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0449	XR_003239902.1	-	306	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0450	XR_003239902.1	-	327	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0451	XR_003239902.1	+	350	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0452	XR_003239902.1	+	371	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0453	XR_003239902.1	+	413	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0454	XR_003239902.1	+	434	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0455	XR_003239902.1	-	453	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0456	XR_003239902.1	-	474	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/Y
Osa-phasi12g0457	XR_003239902.1	+	476	LOC112937362	Chr12	+	uncharacterized LOC112937362	N/N
Osa-phasi12g0458	XM_015763573.2	+	93	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X1	N/N
Osa-phasi12g0459	XM_015763573.2	-	112	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X1	N/N
Osa-phasi12g0460	XM_015763573.2	+	114	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X1	N/N
Osa-phasi12g0461	XM_015763573.2	-	133	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X1	N/N
Osa-phasi12g0462	XR_001541963.2	+	108	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0463	XR_001541963.2	-	127	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0464	XR_001541963.2	+	129	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0465	XR_001541963.2	-	148	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0466	XR_001541963.2	+	790	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0467	XR_001541963.2	+	811	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0468	XR_001541963.2	-	830	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0469	XR_001541963.2	+	832	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0470	XR_001541963.2	-	851	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0471	XR_001541963.2	+	853	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0472	XR_001541963.2	+	874	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0473	XR_001541963.2	+	895	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0474	XR_001541963.2	-	956	LOC107278683	Chr12	-	late embryogenesis abundant protein D-34, transcript variant X2	N/N
Osa-phasi12g0475	XM_026021928.1	+	4602	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0476	XM_026021928.1	-	4642	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0477	XM_026021928.1	-	4684	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0478	XM_026021928.1	+	4686	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0479	XM_026021928.1	-	4705	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0480	XM_026021928.1	+	4707	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0481	XM_026021928.1	-	4726	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0482	XM_026021928.1	+	4728	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0483	XM_026021928.1	-	4747	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0484	XM_026021928.1	-	4768	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0485	XM_026021928.1	+	4770	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0486	XM_026021928.1	+	4812	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0487	XM_026021928.1	-	4831	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0488	XM_026021928.1	+	4833	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0489	XM_026021928.1	+	4854	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0490	XM_026021928.1	+	4875	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0491	XM_026021928.1	+	4896	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0492	XM_026021928.1	+	5895	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0493	XM_026021928.1	+	5916	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0494	XM_026021928.1	-	5956	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0495	XM_026021928.1	+	5958	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0496	XM_026021928.1	-	5977	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0497	XM_026021928.1	-	5998	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0638	XR_003240093.1	-	1072	LOC112937456	Chr12	-	uncharacterized LOC112937456	N/N
Osa-phasi12g0498	XM_026021928.1	-	6019	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0499	XM_026021928.1	+	6042	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0500	XM_026021928.1	-	6103	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0501	XM_026021928.1	+	6168	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0502	XM_026021928.1	+	7481	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0503	XM_026021928.1	+	7502	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0504	XM_026021928.1	-	7542	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0505	XM_026021928.1	+	7544	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0506	XM_026021928.1	-	7584	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0507	XM_026021928.1	+	7586	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0508	XM_026021928.1	-	7605	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0509	XM_026021928.1	+	7670	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0510	XM_026021928.1	+	7691	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/Y
Osa-phasi12g0511	XM_026021928.1	+	7754	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X1	N/N
Osa-phasi12g0512	XM_026021929.1	+	3646	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/N
Osa-phasi12g0513	XM_026021929.1	-	3686	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/Y
Osa-phasi12g0514	XM_026021929.1	-	3728	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/N
Osa-phasi12g0515	XM_026021929.1	+	3730	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/Y
Osa-phasi12g0516	XM_026021929.1	-	3749	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/Y
Osa-phasi12g0517	XM_026021929.1	+	3751	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/Y
Osa-phasi12g0518	XM_026021929.1	-	3770	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/N
Osa-phasi12g0519	XM_026021929.1	+	3772	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/N
Osa-phasi12g0520	XM_026021929.1	-	3791	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/Y
Osa-phasi12g0521	XM_026021929.1	-	3812	LOC107276318	Chr12	+	calcium-dependent protein kinase 27-like, transcript variant X2	N/N