PhasiRNAnalyzer

Downloadable datasets

Species	Genome datasets	Number
Abrus_precatorius		1
Actinidia_chinensis		1
Aegilops_tauschii		2
Amaranthus_hypochondriacus		1
Amborella_trichopoda		3
Anans_comosus		2
Aquilegia_coerulea		1
Arabidopsis_halleri		2
Arabidopsis_lyrata		3
Arabidopsis_thaliana		3
Arachis_duranensis		1
Arachis_hypogaea		1
Arachis_ipaensis		1
Asparagus_officinalis		1
Auxenochlorella_protothecoides		1
Bathycoccus_prasinos		1
Beta_vulgaris		2
Boechera_stricta		1
Brachypodium_distachyon		3
Brachypodium_stacei		1
Brassica_napus		2
Brassica_oleracea		3
Brassica_rapa		3
Cajanus_cajan		1
Camelina_sativa		1
Camellia_sinensis		1
Cannabis_sativa		1
Capsella_grandiflora		1
Capsella_rubella		2
Capsicum_annuum		2
Carica_papaya		2
Chenopodium_quinoa		1
Chlamydomonas_reinhardtii		3
Chlorella_variabilis		1
Chondrus_crispus		2
Cicer_arietinum		1
Citrus_clementina		3
Citrus_sinensis		2
Coccomyxa_subellipsoidea		2
Coffea_arabica		1
Coffea_canephora		1
Coffea_eugenioides		1
Corchorus_capsularis		1
Cucumis_melo		1
Cucumis_sativus		3
Cucurbita_maxima		1
Cucurbita_moschata		1
Cucurbita_pepo		1
Cyanidioschyzon_merolae		2
Cynara_cardunculus		2
Daucus_carota		3
Dendrobium_catenatum		1
Dioscorea_rotundata		1
Dunaliella_salina		1
Durio_zibethinus		1
Ectocarpus_siliculosus		0
Elaeis_guineensis		1
Eragrostis_tef		1
Erythranthe_guttata		1
Eucalyptus_grandis		2
Eutrema_salsugineum		2
Festuca_arundinacea		0
Fragaria_vesca		2
Galdieria_sulphuraria		2
Glycine_max		3
Glycine_soja		1
Gossypium_arboreum		1
Gossypium_hirsutum		1
Gossypium_raimondii		3
Helianthus_annuus		2
Herrania_umbratica		1
Hevea_brasiliensis		1
Hordeum_vulgare		1
Ipomoea_nil		1
Ipomoea_triloba		2
Jatropha_curcas		1
Juglans_regia		1
Kalanchoe_fedtschenkoi		1
Kalanchoe_laxiflora		1
Lactuca_sativa		1
Leersia_perrieri		1
Linum_usitatissimum		1
Lotus_japonicus		2
Lupinus_angustifolius		0
Malus_domestica		2
Manihot_esculenta		3
Marchantia_polymorpha		2
Medicago_truncatula		3
Micromonas_commoda		1
Micromonas_pusilla		2
Micromonas_sp_RCC299		1
Mimulus_guttatus		1
Momordica_charantia		1
Monoraphidium_neglectum		1
Morus_notabilis		1
Musa_acuminata		3
Nelumbo_nucifera		1
Nicotiana_attenuata		2
Nicotiana_sylvestris		1
Nicotiana_tabacum		1
Nicotiana_tomentosiformis		1
Nymphaea_colorata		1
Olea_europaea		1
Oropetium_thomaeum		1
Oryza_barthii		1
Oryza_brachyantha		2
Oryza_glaberrima		1
Oryza_glumipatula		1
Oryza_indica		1
Oryza_longistaminata		1
Oryza_meridionalis		1
Oryza_nivara		1
Oryza_punctata		1
Oryza_rufipogon		1
Oryza_sativa		3
Ostreococcus_lucimarinus		3
Ostreococcus_tauri		1
Panicum_hallii		3
Panicum_virgatum		1
Papaver_somniferum		1
Phalaenopsis_equestris		1
Phaseolus_vulgaris		3
Phoenix_dactylifera		1
Physcomitrella_patens		3
Picea_abies		0
Pistacia_vera		1
Populus_euphratica		1
Populus_trichocarpa		3
Prosopis_alba		1
Prunus_avium		2
Prunus_mume		1
Prunus_persica		3
Punica_granatum		1
Pyrus_x_bretschneideri		1
Quercus_lobata		1
Quercus_suber		1
Raphanus_sativus		1
Rhodamnia_argentea		1
Ricinus_communis		2
Rosa_chinensis		1
Saccharum_officinarum		0
Saccharum_spontaneum		1
Salix_purpurea		1
Selaginella_moellendorffii		3
Sesamum_indicum		1
Setaria_italica		3
Setaria_viridis		1
Solanum_lycopersicum		3
Solanum_pennellii		1
Solanum_tuberosum		3
Sorghum_bicolor		3
Sphagnum_fallax		1
Spinacia_oleracea		1
Spirodela_polyrhiza		1
Syzygium_oleosum		1
Tarenaya_hassleriana		1
Theobroma_cacao		3
Trifolium_pratense		2
Triticum_aestivum		1
Triticum_dicoccoides		1
Triticum_turgidum		1
Triticum_urartu		1
Vigna_angularis		2
Vigna_radiata		2
Vigna_unguiculata		1
Vitis_vinifera		3
Volvox_carteri		2
Zea_mays		3
Ziziphus_jujuba		1
Zostera_marina		1

Species	cDNA libraries	Number
Abrus_precatorius		1
Actinidia_chinensis		2
Aegilops_tauschii		3
Amaranthus_hypochondriacus		2
Amborella_trichopoda		6
Anans_comosus		3
Aquilegia_coerulea		3
Arabidopsis_halleri		4
Arabidopsis_lyrata		6
Arabidopsis_thaliana		6
Arachis_duranensis		1
Arachis_hypogaea		2
Arachis_ipaensis		1
Asparagus_officinalis		1
Auxenochlorella_protothecoides		1
Bathycoccus_prasinos		1
Beta_vulgaris		3
Boechera_stricta		2
Brachypodium_distachyon		6
Brachypodium_stacei		2
Brassica_napus		4
Brassica_oleracea		6
Brassica_rapa		6
Cajanus_cajan		1
Camelina_sativa		1
Camellia_sinensis		1
Cannabis_sativa		1
Capsella_grandiflora		2
Capsella_rubella		3
Capsicum_annuum		3
Carica_papaya		4
Chenopodium_quinoa		1
Chlamydomonas_reinhardtii		6
Chlorella_variabilis		1
Chondrus_crispus		3
Cicer_arietinum		1
Citrus_clementina		6
Citrus_sinensis		4
Coccomyxa_subellipsoidea		3
Coffea_arabica		1
Coffea_canephora		2
Coffea_eugenioides		1
Corchorus_capsularis		2
Cucumis_melo		2
Cucumis_sativus		6
Cucurbita_maxima		1
Cucurbita_moschata		1
Cucurbita_pepo		1
Cyanidioschyzon_merolae		3
Cynara_cardunculus		3
Daucus_carota		5
Dendrobium_catenatum		1
Dioscorea_rotundata		2
Dunaliella_salina		2
Durio_zibethinus		1
Ectocarpus_siliculosus		1
Elaeis_guineensis		2
Eragrostis_tef		2
Erythranthe_guttata		1
Eucalyptus_grandis		3
Eutrema_salsugineum		3
Festuca_arundinacea		1
Fragaria_vesca		4
Galdieria_sulphuraria		3
Glycine_max		6
Glycine_soja		1
Gossypium_arboreum		2
Gossypium_hirsutum		2
Gossypium_raimondii		6
Helianthus_annuus		4
Herrania_umbratica		1
Hevea_brasiliensis		1
Hordeum_vulgare		3
Ipomoea_nil		1
Ipomoea_triloba		3
Jatropha_curcas		1
Juglans_regia		1
Kalanchoe_fedtschenkoi		2
Kalanchoe_laxiflora		2
Lactuca_sativa		1
Leersia_perrieri		2
Linum_usitatissimum		3
Lotus_japonicus		3
Lupinus_angustifolius		1
Malus_domestica		4
Manihot_esculenta		6
Marchantia_polymorpha		4
Medicago_truncatula		6
Micromonas_commoda		1
Micromonas_pusilla		3
Micromonas_sp_RCC299		2
Mimulus_guttatus		2
Momordica_charantia		1
Monoraphidium_neglectum		1
Morus_notabilis		1
Musa_acuminata		5
Nelumbo_nucifera		1
Nicotiana_attenuata		3
Nicotiana_sylvestris		1
Nicotiana_tabacum		2
Nicotiana_tomentosiformis		1
Nymphaea_colorata		1
Olea_europaea		1
Oropetium_thomaeum		2
Oryza_barthii		2
Oryza_brachyantha		3
Oryza_glaberrima		2
Oryza_glumipatula		2
Oryza_indica		2
Oryza_longistaminata		2
Oryza_meridionalis		3
Oryza_nivara		2
Oryza_punctata		2
Oryza_rufipogon		2
Oryza_sativa		6
Ostreococcus_lucimarinus		5
Ostreococcus_tauri		1
Panicum_hallii		5
Panicum_virgatum		2
Papaver_somniferum		1
Phalaenopsis_equestris		1
Phaseolus_vulgaris		6
Phoenix_dactylifera		1
Physcomitrella_patens		6
Picea_abies		1
Pistacia_vera		1
Populus_euphratica		1
Populus_trichocarpa		6
Prosopis_alba		1
Prunus_avium		3
Prunus_mume		1
Prunus_persica		6
Punica_granatum		1
Pyrus_x_bretschneideri		1
Quercus_lobata		1
Quercus_suber		1
Raphanus_sativus		1
Rhodamnia_argentea		1
Ricinus_communis		4
Rosa_chinensis		1
Saccharum_officinarum		1
Saccharum_spontaneum		2
Salix_purpurea		2
Selaginella_moellendorffii		6
Sesamum_indicum		1
Setaria_italica		5
Setaria_viridis		2
Solanum_lycopersicum		6
Solanum_pennellii		1
Solanum_tuberosum		6
Sorghum_bicolor		6
Sphagnum_fallax		2
Spinacia_oleracea		1
Spirodela_polyrhiza		2
Syzygium_oleosum		1
Tarenaya_hassleriana		1
Theobroma_cacao		6
Trifolium_pratense		4
Triticum_aestivum		3
Triticum_dicoccoides		2
Triticum_turgidum		2
Triticum_urartu		2
Vigna_angularis		3
Vigna_radiata		3
Vigna_unguiculata		2
Vitis_vinifera		6
Volvox_carteri		3
Zea_mays		6
Ziziphus_jujuba		1
Zostera_marina		2

Species	Source	Number of Mature-miRNA
Aegilops_tauschii	miRBase	173
Amborella_trichopoda	miRBase	129
Aquilegia_coerulea	miRBase	45
Arabidopsis_lyrata	miRBase	384
Arabidopsis_thaliana	miRBase	428
Arachis_hypogaea	miRBase	32
Asparagus_officinalis	miRBase	101
Brachypodium_distachyon	miRBase	525
Brassica_napus	miRBase	92
Brassica_oleracea	miRBase	11
Brassica_rapa	miRBase	157
Camelina_sativa	miRBase	112
Carica_papaya	miRBase	81
Chlamydomonas_reinhardtii	miRBase	86
Citrus_clementina	miRBase	5
Citrus_sinensis	miRBase	246
Cucumis_melo	miRBase	120
Cucumis_sativus	miRBase	5
Cynara_cardunculus	miRBase	57
Ectocarpus_siliculosus	miRBase	77
Elaeis_guineensis	miRBase	6
Festuca_arundinacea	miRBase	15
Fragaria_vesca	miRBase	131
Glycine_max	miRBase	756
Glycine_soja	miRBase	13
Gossypium_arboreum	miRBase	1
Gossypium_hirsutum	miRBase	80
Gossypium_raimondii	miRBase	296
Helianthus_annuus	miRBase	7
Hevea_brasiliensis	miRBase	30
Hordeum_vulgare	miRBase	71
Linum_usitatissimum	miRBase	124
Lotus_japonicus	miRBase	365
Malus_domestica	miRBase	322
Manihot_esculenta	miRBase	175
Medicago_truncatula	miRBase	756
Nicotiana_tabacum	miRBase	164
Oryza_sativa	miRBase	738
Phaseolus_vulgaris	miRBase	10
Physcomitrella_patens	miRBase	298
Picea_abies	miRBase	600
Populus_euphratica	miRBase	4
Populus_trichocarpa	miRBase	401
Prunus_persica	miRBase	214
Ricinus_communis	miRBase	63
Saccharum_officinarum	miRBase	16
Saccharum_spontaneum	miRBase	20
Selaginella_moellendorffii	miRBase	64
Solanum_lycopersicum	miRBase	147
Solanum_tuberosum	miRBase	343
Sorghum_bicolor	miRBase	241
Theobroma_cacao	miRBase	82
Triticum_aestivum	miRBase	125
Triticum_turgidum	miRBase	1
Vigna_unguiculata	miRBase	18
Vitis_vinifera	miRBase	186
Zea_mays	miRBase	325

See details of degradome data in this page.

Species	Details	Number of Degradome data
Amborella_trichopoda	See more	3
Arabidopsis_thaliana	See more	61
Asparagus_officinalis	See more	15
Brachypodium_distachyon	See more	8
Brassica_napus	See more	2
Capsicum_annuum	See more	2
Citrus_sinensis	See more	7
Elaeis_guineensis	See more	2
Glycine_max	See more	30
Gossypium_hirsutum	See more	6
Hordeum_vulgare	See more	3
Lactuca_sativa	See more	10
Malus_domestica	See more	3
Medicago_truncatula	See more	10
Oryza_rufipogon	See more	1
Oryza_sativa	See more	30
Phaseolus_vulgaris	See more	4
Physcomitrella_patens	See more	2
Populus_trichocarpa	See more	2
Prunus_persica	See more	10
Selaginella_moellendorffii	See more	1
Setaria_italica	See more	5
Solanum_lycopersicum	See more	18
Solanum_tuberosum	See more	8
Triticum_aestivum	See more	12
Vitis_vinifera	See more	3
Zea_mays	See more	13

Statistic information for 21-nt phasiRNA analysis in Oryza sativa across 100 small RNA-seq samples by using PhasiRNAnalyzer.
Click here to download the data: Os_21nt_phasiRNA.txt

Statistic information for 24-nt phasiRNA analysis in Oryza sativa across 100 small RNA-seq samples by using PhasiRNAnalyzer.
Click here to download the data: Os_24nt_phasiRNA.txt