PhasiRNAnalyzer

Downloadable datasets -> Degradome data

Species:

Degradome	Tissue	Description	Genotype
GSM848963	Cotyledon	Early maturation green 25-50 mg	Williams
GSM848964	Seed Coat	Early maturation green 25-50 mg	Williams
GSM848965	Cotyledon	Mid maturation yellow-green 100-200 mg	Williams
GSM848966	Seed Coat	Mid maturation yellow-green 100-200 mg	Williams
GSM848967	Cotyledon	Late maturation yellow 300-400 mg	Williams
GSM1419390	Leaves	Well watered	IA3023
GSM1419391	Leaves	Drought stressed	IA3023
GSM1419392	Leaves	Well watered	LD003309
GSM1419393	Leaves	Drought stressed	LD003309
GSM1874240	Leaf samples from 4 mixed tissues	Tissue 1: cotyledon from germination stage; tissue 2: new leaf from germination stage; tissue 3: old cotyledon from trefoil stage; tissue 4: new leaf from trefoil stage	cv. Williams 82
GSM1874241	Root and stem sample from 2 mixed tissues	Tissue 1: root from gemination stage; tissue 2: stem from gemination stage	cv. Williams 82
GSM1874242	Flower sample from 2 mixed tissues	Tissue 1: flower bud from flower bud differentiation stage; tissue 2: flower bud from flowering stage	cv. Williams 82
GSM1874243	Seed sample from 4 mixed tissues	Tssue 1: the pods of one week; tissue 2: the pods of two weeks; tissue 3: the pods of three weeks; tissue 4: developing seeds around 6 weeks.	cv. Williams 82
GSM2059589	Leaves	Innoculation: Mock; age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C.	Rsv1
GSM2059590	Leaves	Innoculation: SMV-L; ;age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C	Rsv1
GSM2059591	Leaves	Innoculation: SMV-G7; ;age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C	Rsv1
GSM2029569	Leaves	Innoculation: Mock; age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C.	Williams82
GSM2029570	Leaves	Innoculation: SMV-L;age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C	Williams82
GSM2029571	Leaves	Innoculation: SMV-LRB;age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C	Williams82
GSM2029572	Leaves	Innoculation: SMV-G7; ;age: 14 days post-inoculation; Soybeans were grown in a growth chamber under a 16 h light at 22°C and 8 h dark at 18°C	Williams82
GSM825574	Root, stem, leaf, and inflorescence	The soybeans were grown in greenhouse under natural daylight conditions. The root, stem and leaf were collected and quickly frozen in liquid nitrogen for RNA isolation from four-week-old seedlings	Williams82
GSM647200	Seed	15 days after flowering	Heinong44
GSM2011601	Leaves	10 days after pollination; pooled chilled and control leaves	Taiwan 75
SRR6122991	Root	Plant sample from soybean of Root-mix degradome sample	——
SRR6122992	Leaf	Plant sample from soybean of Leaf-mix degradome sample	——
SRR2968983	Flower buds	Degradome libraries derived from flower buds of NJCMS1B	——
SRR2968982	Flower buds	Degradome library derived from flower buds of NJCMS1A	——
SRR954983	Root	70% relative humidity, 28 °C / 25 °C and a light regime of 14 h light / 10 h dark	——
CCO_15d	——	Crop Bioinformatics Group, NJAU	——
CK_15d	——	Crop Bioinformatics Group, NJAU	——