Downloadable datasets -> Degradome data
Species:  

Degradome Tissue Description Genotype Processed Data
GSM278333Inflorescence tissueArabidopsis-thalianagrown at 22C, 16hr/8hr light/dark for ~60 daysWild-type, Col-0
GSM278334Inflorescence tissueArabidopsis-thalianagrown at 22C, 16hr/8hr light/dark for ~60 days.Wild-type, Col-0
GSM278335Inflorescence tissueArabidopsis-thalianagrown at 22C, 16hr/8hr light/dark for ~60 days.Wild-type, Col-0
GSM278370SeedlingsArabidopsis-thalianagrown at 22C, 16hr/8hr light/dark for 10 days on MS-Agar plates.Wild-type, Col-0
GSM280226Inflorescence, floral tissue (up to stage 11/12)Tissues and cells were harvested on iceWild type
GSM280227Inflorescence, floral tissue (up to stage 11/12)Tissues and cells were harvested on icexrn4
GSM284751InflorescenceUnopened flower budsCol-0
GSM284752InflorescenceUnopened flower buds, mutantein-5
GSM1263708Mix-stage inflorescence(contain majority of unopened flower buds)Arabidopsis grown under standard long day growth conditionsCol-0
GSM1263709Mix-stage inflorescence(contain majority of unopened flower buds)Arabidopsis grown under standard long day growth conditionsddm1-2
GSM1263710Mix-stage inflorescence(contain majority of unopened flower buds)Arabidopsis grown under standard long day growth conditionsrdr6-15
GSM1263711Mix-stage inflorescence(contain majority of unopened flower buds)Arabidopsis grown under standard long day growth conditionsddm1-2 rdr6-15
GSM2249228SeedlingsSeeds of wild type (Col) and ago1-27 were sterilized, plated on the 1/2 Murashige and Skoog medium and grew under long-day conditions (16 h light/8 h in dark) at 22℃.wild type
GSM2249229SeedlingsSeeds of wild type (Col) and ago1-27 were sterilized, plated on the 1/2 Murashige and Skoog medium and grew under long-day conditions (16 h light/8 h in dark) at 22℃ago1-27
GSM3019138LeavesArabidopsis plants were grown in chambers at 22-24 ºC and with a 16h photoperiodColumbia-0
GSM3019139LeavesArabidopsis plants were grown in chambers at 22-24 ºC and with a 16h photoperiodColumbia-0
GSM3019140InflorescencesArabidopsis plants were grown in chambers at 22-24 ºC and with a 16h photoperiodColumbia-0
GSM3124754LeafArabidopsis Col-0 seeds were stratified and then grown in soil at constant 22 C and 16 hours light until plants reached stage 5Wild-type, Col-0
GSM3124755LeafArabidopsis Col-0 seeds were stratified and then grown in soil at constant 22 C and 16 hours light until plants reached stage 5Wild-type, Col-0
GSM3124756LeafArabidopsis Col-0 seeds were stratified and then grown in soil at constant 22 C and 16 hours light until plants reached stage 5Wild-type, Col-0
SRR1821008FlowerThe total RNA was extracted from CrMIR396 OX Arabidopsis for degradome library preparation.CrMIR396 OX
SRR1821048FlowerThe total RNA was extracted from flower tissue of Col-0 plantsCol-0
SRR1821156FlowerThe total RNA was extracted from flower of SAP54 OX plant for library preparation.SAP54 OX
SRR1821172FlowerThe total RNA was extracted from flower of xrn4-5 mutant for library preparation.xrn4-5
SRR3713539SeedlingsSurface steriled seeds were stratified at 4 °C for 4 days on 1/2 MS medium. The stratified seeds were them applled 1 h of white light exposure to synchronize germination, then placed in dark for 4 days at 22 °C.Wild-type,Col-0
SRR3713540SeedlingsSurface steriled seeds were stratified at 4 °C for 4 days on 1/2 MS medium. The stratified seeds were them applled 1 h of white light exposure to synchronize germination, then placed in dark for 4 days at 22 °C.Wild-type,Col-0
SRR5724556RosetteRRGD Timepoint II - excess-light 30 min rep 1——
SRR5724557RosetteRRGD Timepoint I - control light rep 1——
SRR5724564RosetteRRGD Timepoint IV - excess-light 120 min rep 1——
SRR5724565RosetteRRGD Timepoint III - excess-light 60 min rep 1——
SRR5724566RosetteRRGD Timepoint V - recovery 7.5 min rep 1——
SRR5724567RosetteRRGD Timepoint VI - recovery 15 min rep 1——
SRR5724568RosetteRRGD Timepoint VII - recovery 30 min rep 1——
SRR5724569RosetteRRGD Timepoint VIII - recovery 60 min rep 1——
SRR5724570RosetteRRGD Timepoint IX - recovery 60 min + repeat excess-light 60 min rep 1——
SRR5724571RosetteRRGD Timepoint X - recovery 24 hr rep 1——
SRR5724576RosetteRRGD Timepoint XI - recovery 24 hr + excess-light 60 min rep 1——
SRR6041069FlowerDegradome from the flower of Arabidopsis plants grown at 15 °C, replica 1——
SRR6041070FlowerDegradome from the flower of Arabidopsis plants grown at 15 °C, replica 2——
SRR6041071FlowerDegradome from the flower of Arabidopsis plants grown at 21 °C, replica 1——
SRR6041072FlowerDegradome from the flower of Arabidopsis plants grown at 21 °C, replica 2——
SRR6041077SeedlingsDegradome from whole Arabidopsis seedlings grown at 27 °C, replica 1——
SRR6041078SeedlingsDegradome from whole Arabidopsis seedlings grown at 27 °C, replica 2——
SRR6041079SeedlingsDegradome from whole Arabidopsis seedlings grown at 21 °C, replica 1——
SRR6041080SeedlingsDegradome from whole Arabidopsis seedlings grown at 21 °C, replica 2——
SRR6041081FlowerDegradome from the flower of Arabidopsis plants grown at 27 °C, replica 1——
SRR6041082FlowerDegradome from the flower of Arabidopsis plants grown at 27 °C, replica 2——
SRR6041083RootDegradome from the root of Arabidopsis seedlings grown at 27 °C, replica 1——
SRR6041084RootDegradome from the root of Arabidopsis seedlings grown at 27 °C, replica 2——
SRR6041085RootDegradome from the root of Arabidopsis seedlings grown at 21 °C, replica 2——
SRR6041086RootDegradome from the root of Arabidopsis seedlings grown at 21 °C, replica 1——
SRR6041097LeafDegradome from the leaf of Arabidopsis plants grown at 21 °C, replica 2——
SRR6041101LeafDegradome from the leaf of Arabidopsis plants grown at 21 °C, replica 1——
SRR6041114LeafDegradome from the leaf of Arabidopsis plants grown at 15 °C, replica 2——
SRR6041115LeafDegradome from the leaf of Arabidopsis plants grown at 15 °C, replica 1——
SRR6041116RootDegradome from the root of Arabidopsis seedlings grown at 15 °C, replica 2——
SRR6041117RootDegradome from the root of Arabidopsis seedlings grown at 15 °C, replica 1——
SRR6041118LeafDegradome from the leaf of Arabidopsis plants grown at 27 °C, replica 2——
SRR6041119LeafDegradome from the leaf of Arabidopsis plants grown at 27 °C, replica 1——
SRR6041120SeedlingsDegradome from whole Arabidopsis seedlings grown at 15 °C, replica 2——
SRR6041128SeedlingsDegradome from whole Arabidopsis seedlings grown at 15 °C, replica 1——

Crop Bioinformatics Group, College of Agriculture, NanJing Agricultural University
Contact us at huangji@njau.edu.cn (Ji Huang) or 2016201004@njau.edu.cn (Yuhan Fei)