Analysis

NcRNA Expression
- Tissue-specific expression
- Anatomy
NcRNA Differential Expression
- Condition-specific expression
- Pertubations
NcRNA Mining
- Tissue-specifically expressed ncRNA mining
NcRNA Co-Expression

Tissue-specific expression: Query the expression of a certain gene or sRNA in all tissues

Source:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Data type:

log2 line

Sample type:

control all

control: Contains only the original control samples.
all: Contains all samples, both control and treatment.

Source name:

lncRNA: e.g. Gma-LNC0001

Tissue-specifically expressed ncRNA mining: Query the specific expression genes or sRNAs in a certain tissue

Source:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Tissue name:

τ value threshold:

(ubiquitous) 0 -- 1 (specific)

Expression threshold:

Anatomy: Query the expression of all genes or sRNAs in a certain tissue

Source:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Tissue name:

Condition-specific expression: Query the differential expression of a certain gene or sRNA in all stress conditions

Source:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Source name:

lncRNA: e.g. Gma-LNC0001

Perturbations: Query the differential expression genes or sRNAs in a certain stress condition

Source:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Status:

up-regulated down-regulated both

Fold Change Cutoff:

FDR Cutoff:

Condition:

PCC curve:

Source Data Type:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Target Data Type:

long non-coding RNA PHAS gene transcript factor RNA-binding protein microRNA phased siRNA coding gene

Library:

portion (21) all (141)

Source name:

lncRNA: e.g. Gma-LNC0001 Gma-LNC0002

Correlation:

positive negative

PCC cutoff:

PCC network:

Start Point Type:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Library:

portion (21) all (141)

Layer:

1 2 3

Target Point Type(1st Layer):

long non-coding RNA PHAS gene transcript factor RNA-binding protein microRNA phased siRNA coding gene

Target Point Type(2nd Layer):

long non-coding RNA PHAS gene transcript factor RNA-binding protein microRNA phased siRNA coding gene

Target Point Type(3rd Layer):

long non-coding RNA PHAS gene transcript factor RNA-binding protein microRNA phased siRNA coding gene

PCC cutoff(1st Layer):

PCC cutoff(2nd Layer):

PCC cutoff(3rd Layer):

Correlation(1st Layer):

positive negative both

Correlation(2nd Layer):

positive negative both

Correlation(3rd Layer):

positive negative both

Maximum of Nodes(1st Layer):

top 5 top 10 top 20 use all results

Maximum of Nodes(2nd Layer):

top 5 top 10 top 20 use all results

Maximum of Nodes(3rd Layer):

top 5 top 10 top 20 use all results

Start Point:

lncRNA: e.g. Gma-miR4996 miR4996

WGCNA network:

Source types:

long non-coding RNA microRNA phased siRNA PHAS gene coding gene

Library:

portion (21) all (141)

Source name:

miRNA: e.g. Gma-miR4996 miR4996