RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Gene Co-expression and Machine Learning

Note

RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Gene Co-expression and Machine Learning

Input the locus name of a transcription factor or target gene to query the corresponding TF-target pairs based on gene co-expression and machine learning

TF e.g. LOC_Os02g52780 OR Os02g0766700

Target e.g. LOC_Os01g20930 OR Os01g0311400

Transcription Factor Target Gene

Browse Extensions BLAST Tutorials Download Example Advanced Options

PCC cutoff:

Library Type:

tissue-based (21) whole-based (149)

Correlation:

Both Positive (+) Negative (-)

TFBS number on the promoter:

unlimited Must be >= 1

Machine Learning Prediction Label:

unlimited label = 1

Citation:
Zhang B, Zhu X, Chen Z, Zhang H, Huang J, Huang J (2023) RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Co-expression and Machine Learning. Plant Physiol https://doi.org/10.1093/plphys/kiad332

Crop Bioinformatics Group, College of Agriculture, NanJing Agricultural University
Contact us at huangji@njau.edu.cn (Ji Huang) or 2020201005@stu.njau.edu.cn (Baoyi Zhang)