Chr:
Chr10
Start:
12881991
End:
12885762
Strand:
+
Ref_name:
LOC107276735
Sequence
(XR_001540660.2):
AGCAUAUAAAGAGCACCUAAUCCCAGUGUUAAAUUCACGUACCAGGGACAACAAAAAGCUGCCUGAGGAUGAGAUAGGAGGAAAACGAUAGCUGAUAGGGAUCGUGUGAUGGGGGCGUGAGCAGAUCUGUGCCGUCCGUUCCGCCGCCCGGCGCAUCUCAGCCGUCCACGUGCUCGUCUAGCUGCCGGUCCAUGUAUGGGGCGUAUGGCUUUUUCUUCUUCCUCAUUCUUUUUUUGAGCUUUGAGUGUCCUCAUCUCAUCUCAUCACAUCAGCUCUCGCCUUCAGUUCCUCCCCGCCGCAUCUCCCAUCUCGUAUUUCCCAUCCUCCCUUCGCGCGUCUGGGUGAGGAUUCGGGCUUGUACUUCUUGUUAAUCCCUAGUCCUUCAGUCCUUCUCCCAUCAGGUGUCGAUUUGGUCUAUUGGUUUUUCUUUUUUACUUUGCUUAAUUCUCGUUUUUUUUUUUAAAAAAAAGGGUUGUUCUGUUGGAUCUCCAGCUGGAGCCAAGGAUACAUACUAGUAGUAAUUUCUGUUGGUUUGUUUUAGUGAUUUAUCUUGGUUUUUUUAGAUCUGGUAUACAUCUCCCGUGGUUCGAUUGGGCUGGGUAUUUGUUCUUUGAAGAUUGGUGUUUUCAGUUUUUCUUGCGUGCUAGUGAUGAUUAAAGAAGUUAAAAAUGGUGAAUCCUGGAUUAAUGUGCUCGCGUGCCGCUGUGUGCGCGCGCGGCUGGAGAUUUUUUUUUUCUCUCUGUUCUUCUGUGAGUUCUUCUAUGGAAAAUAUAUUUUUUUUCUUCUAACCUCUCCUUAAUUUGACUCGUGUGCGUAGUUACUUGCAGGUUGUCAGAAUUACUAGGUUUUGAAAUUACGACUGGUACUCCAGGCUGGUAGAGCGGCAAGGUCGUGUACAGGUCUUUGUCUUUGAUGCAAAGGUGGAAGGUGCUGCUAAAAGAAAAGGAGUGUACUAGCUUGGAUGUCUUUCAAGCAAAGAUAAUGCUGACGUUGGAAGUGCUGAAGCCGACUGAUAAUCUUCCUGAUGAUAUAGGAUAGUUCAUGGGAAUGGGCUCUGAAAAUAUUUGGUCUUUUGUUGUGGGUGUUAAAAUGUCUGGAAGGGGGCUAGGUUUAGUGGAUGUCCAAGCUUUUGUUGAGCUGGUUUGGAAAACUGGAAUCCCCAGUUUUUUGUUUCCUUUUGUUUCGUUUUUCUGUAAGAACUCUGUUUCGUUUGGGCUUUUUCUAAAGCCGGGUAAUAUAUGCCUGUUGUCAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.66%
ME_num:
MEP:
43.09%
HE_num:
HEP:
53.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.64
Avg Expression:
14.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.00532157334829 | 3.64800411129769e-22 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.39890468343305 | 1.19659790398547e-23 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.25917513978619 | 4.72952348855962e-25 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.50483747682981 | 2.01314047263661e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.17293006906165 | 2.35387843948094e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.03785081735677 | 1.66412219679271e-18 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.29957682825292 | 4.49664275303908e-29 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.04621819155913 | 0.0441255746920934 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.97379596986969 | 1.82756200440862e-05 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.57275296530994 | 0.00135250466492553 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.453837665424 | 1.17919231360886e-07 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.0328513213312 | 0.00492827885446143 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.79924714453892 | 1.27216853048538e-06 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | 3.05702597929667 | 2.43212620042903e-20 |
| 15 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.41617455000393 | 0.000266240217448908 |
| 16 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.65565245880626 | 7.76347151589256e-08 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.5142402745493 | 8.98337455502814e-26 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.6057937840962 | 8.71527414315266e-31 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.81991623391054 | 8.61693416849663e-20 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.107693812424 | 0.00694033338756921 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.62146184179325 | 2.60266958783022e-22 |
| 22 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.34221083782487 | 2.07687528913093e-16 |
| 23 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.59092248965887 | 4.07461133442469e-13 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.19974612525541 | 4.43116673029086e-34 |