Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR10519_PmiREN	98	35.77%	24	8.76%	106	38.69%	46	16.79%	HCR
Osa-miR1122a_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1122b_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1130_PmiREN	206	75.18%	64	23.36%	4	1.46%	0	0.0%	MCR
Osa-miR11336_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11337a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337b_PmiREN	78	28.47%	78	28.47%	118	43.07%	0	0.0%	MCR
Osa-miR11337c_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337d_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337e_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337f_PmiREN	72	26.28%	69	25.18%	127	46.35%	6	2.19%	HCR
Osa-miR11337g_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337h_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337i_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337j_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337k_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337l_PmiREN	62	22.63%	71	25.91%	135	49.27%	6	2.19%	HCR
Osa-miR11337m_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337n_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337o_PmiREN	26	9.49%	33	12.04%	209	76.28%	6	2.19%	HCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

Osa-miR10519_PmiREN

35.77%

8.76%

106

38.69%

16.79%

HCR

Osa-miR1122a_PmiREN

113

41.24%

32.48%

25.91%

0.36%

HCR

Osa-miR1122b_PmiREN

113

41.24%

32.48%

25.91%

0.36%

HCR

Osa-miR1130_PmiREN

206

75.18%

23.36%

1.46%

0.0%

MCR

Osa-miR11336_PmiREN

33.94%

31.75%

34.31%

0.0%

MCR

Osa-miR11337a_PmiREN

14.96%

25.18%

164

59.85%

0.0%

MCR

Osa-miR11337b_PmiREN

28.47%

118

43.07%

0.0%

MCR

Osa-miR11337c_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337d_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337e_PmiREN

30.66%

29.56%

109

39.78%

0.0%

MCR

Osa-miR11337f_PmiREN

26.28%

25.18%

127

46.35%

2.19%

HCR

Osa-miR11337g_PmiREN

30.66%

29.56%

109

39.78%

0.0%

MCR

Osa-miR11337h_PmiREN

30.66%

29.56%

109

39.78%

0.0%

MCR

Osa-miR11337i_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337j_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337k_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337l_PmiREN

22.63%

25.91%

135

49.27%

2.19%

HCR

Osa-miR11337m_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337n_PmiREN

8.76%

10.95%

213

77.74%

2.55%

HCR

Osa-miR11337o_PmiREN

9.49%

12.04%

209

76.28%

2.19%

HCR

miRNAs Expression Capacity