RiceNCexp
Rice Non-coding RNA Co-Expression Atlas
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Tissue-specific Expression:

Take log2 value of the expression to reduce the influence of outliers

e.g. OSA-MIR169C MIR169C miR169c

Differential Expression:

e.g. OSA-MIR169C MIR169C miR169c

Anatomy:

Tissue specifically expressed (tau filter):

The tissues contain a minimum of 10 samples.
(ubiquitous) 0 -- 1 (specific)
The average expression in the tissue which you selected.

Perturbations:

condition format: genotype//tissue//condition (control)--/--(treatment) genotype//tissue//condition

  • MicroRNA
  • PhasiRNA
  • LncRNA
  • PHAS gene
  • Coding Gene
    NC-RNA EXPRESSION TOOLS
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    Tissue Expression

    Query the expression of a certain ncRNA in all tissues

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    Differential Expression

    Query the differential expression of a certain ncRNA in all stress conditions

    GO
    NC-RNA DISCOVERY TOOLS
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    Anatomy

    Query the expression of all ncRNAs in a certain tissue

    GO
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    Tissue Specifically Expressed(tau filter)

    Query the specific expression ncRNAs in a certain tissue

    GO
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    Perturbations

    Query the differential expression ncRNAs in a certain stress condition

    GO
    CO-EXPRESSION TOOLS
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    Co-Expression Curve

    Query the co-expression correlation between any ncRNA (including mRNAs)

    GO
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    Co-Expression Network

    Construct the co-expression network between any ncRNA (including mRNAs)

    GO

Crop Bioinformatics Group, College of Agriculture, NanJing Agricultural University
Contact us at huangji@njau.edu.cn (Ji Huang) or 2020201005@stu.njau.edu.cn (Baoyi Zhang)
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