Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
OSA-PHAS107275616	1	0.2%	470	95.53%	21	4.27%	0	0.0%	MCR
OSA-PHAS107276098	1	0.2%	238	48.37%	253	51.42%	0	0.0%	MCR
OSA-PHAS107276166	1	0.2%	430	87.4%	59	11.99%	2	0.41%	HCR
OSA-PHAS107276173	1	0.2%	345	70.12%	85	17.28%	61	12.4%	HCR
OSA-PHAS107276182	1	0.2%	483	98.17%	8	1.63%	0	0.0%	MCR
OSA-PHAS107276318	1	0.2%	479	97.36%	12	2.44%	0	0.0%	MCR
OSA-PHAS107276571	1	0.2%	456	92.68%	35	7.11%	0	0.0%	MCR
OSA-PHAS107276816	1	0.2%	42	8.54%	438	89.02%	11	2.24%	HCR
OSA-PHAS107277021	1	0.2%	278	56.5%	212	43.09%	1	0.2%	HCR
OSA-PHAS107277402	1	0.2%	480	97.56%	7	1.42%	4	0.81%	HCR
OSA-PHAS107277451	1	0.2%	401	81.5%	90	18.29%	0	0.0%	MCR
OSA-PHAS107277566	1	0.2%	10	2.03%	479	97.36%	2	0.41%	HCR
OSA-PHAS107277874	1	0.2%	474	96.34%	17	3.46%	0	0.0%	MCR
OSA-PHAS107277883	1	0.2%	470	95.53%	21	4.27%	0	0.0%	MCR
OSA-PHAS107277922	1	0.2%	478	97.15%	13	2.64%	0	0.0%	MCR
OSA-PHAS107278365	1	0.2%	285	57.93%	204	41.46%	2	0.41%	HCR
OSA-PHAS107278413	1	0.2%	314	63.82%	177	35.98%	0	0.0%	MCR
OSA-PHAS107278683	1	0.2%	242	49.19%	235	47.76%	14	2.85%	HCR
OSA-PHAS107278829	1	0.2%	22	4.47%	248	50.41%	221	44.92%	HCR
OSA-PHAS107278830	1	0.2%	21	4.27%	236	47.97%	234	47.56%	HCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

OSA-PHAS107275616

0.2%