RiceNCexp:Browse

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR5788d	PmiREN	Chr2	15572963	15572983	-	Y/N
Osa-miR5788f	PmiREN	Chr9	11842898	11842918	+	Y/N
Osa-miR11342a	PmiREN	Chr11	23289399	23289420	-	Y/N
Osa-miR11342b	PmiREN	Chr4	23201075	23201095	+	N/N
Osa-miR812af	PmiREN	Chr3	1453547	1453570	-	Y/N
Osa-miR812ag	PmiREN	Chr1	23374135	23374156	-	Y/N
Osa-miR812ad	PmiREN	Chr6	30201985	30202008	-	Y/Y
Osa-miR812ae	PmiREN	Chr3	17638738	17638761	+	Y/Y
Osa-miR812ab	PmiREN	Chr8	18137891	18137912	+	Y/N
Osa-miR812ac	PmiREN	Chr3	16194432	16194455	-	Y/N
Osa-miR166c	PmiREN	Chr3	3487877	3487897	+	Y/N
Osa-miR166m	PmiREN	Chr8	23045502	23045521	+	Y/Y
Osa-miR812al	PmiREN	Chr6	27596226	27596249	-	Y/N
Osa-miR812aa	PmiREN	Chr7	27140878	27140899	-	Y/N
Osa-miR812ak	PmiREN	Chr8	2687961	2687984	+	Y/N
Osa-miR166j	PmiREN	Chr3	30392799	30392819	-	Y/N
Osa-miR396f	PmiREN	Chr2	35636692	35636712	-	Y/N
Osa-miRN2333	PmiREN	Chr10	14035811	14035831	+	N/N
Osa-miRN2338	PmiREN	Chr12	22033257	22033277	+	N/Y
Osa-miRN2339	PmiREN	Chr12	24831791	24831811	+	N/Y

Name

Database

Confidence

Chromosome

Start

End

Strand

DE/TSE

Detail

Osa-miR5788d

PmiREN

Chr2