This database provide the degradome-based verified interactions between miRNAs and their targets.
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|---|
| GSM284752 | unopened flower buds | ein5-6 | Immature (unopened) flower buds were collected and frozen in liquid nitrogen. | NCBI | |
| GSM284751 | unopened flower buds | Col-0 | Immature (unopened) flower buds were collected and frozen in liquid nitrogen. | NCBI | |
| GSM280227 | floral tissue(up to stage 11-12) | Tissues and cells were harvested on ice | NCBI | ||
| GSM278334 | inflorescence | wild-type,Col-0 | Col-0 wild-type Arabidopsis thaliana grown at 22'C, 16hr/8hr light/dark for ~60 days. Inflorescence tissue was harvested and immediately frozen. | NCBI | |
| GSM278370 | seedlings | wild-type,Col-0 | Col-0 wild-type Arabidopsis thaliana grown at 22'C, 16hr/8hr light/dark for 10 days on MS-Agar plates. Seedlings harvested and immediately frozen | NCBI | |
| GSM280226 | floral tissue(up to stage 11-12) | Tissues and cells were harvested on ice | NCBI | ||
| GSM278335 | inflorescence | wild-type,Col-0 | Col-0 wild-type Arabidopsis thaliana grown at 22'C, 16hr/8hr light/dark for ~60 days. Inflorescence tissue was harvested and immediately frozen. | NCBI | |
| GSM1263708 | mix-stage-inflorescence | variation:Col-0 | Arabidopsis grown under standard long day growth conditions. | NCBI | |
| GSM1263709 | mix-stage-inflorescence | variation:ddm1-2 | Arabidopsis grown under standard long day growth conditions. | NCBI | |
| GSM1263710 | mix-stage-inflorescence | variation:rdr6-15 | Arabidopsis grown under standard long day growth conditions. | NCBI | |
| GSM1263711 | mix-stage-inflorescence | variation:ddm1-2,rdr6-15 | Arabidopsis grown under standard long day growth conditions. | NCBI | |
| GSM2249228 | seedling | wild-type | Seeds of wild type (Col) were sterilized, plated on the 1/2 Murashige and Skoog medium and grew under long-day conditions (16 h light/8 h in dark) at 22'C. | NCBI | |
| GSM2249229 | seedling | ago1-27 | Seeds of ago1-27 were sterilized, plated on the 1/2 Murashige and Skoog medium and grew under long-day conditions (16 h light/8 h in dark) at 22'C. | NCBI | |
| GSM278333 | inflorescence | wild-type,Col-0 | Grown at 22'C, 16hr/8hr light/dark for ~60 days. Inflorescence tissue was harvested and immediately frozen. | NCBI |
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|---|
| GSM647200 | seed | cultivar:Heinong44 | Soybean seeds of 15 days after flowering (DAF) were collected | NCBI | |
| GSM825574 | root,stem,leaf,inflorescence | cultivar:Williams 82 | Grown in greenhouse under natural daylight conditions. The root, stem and leaf were collected and quickly frozen in liquid nitrogen for RNA isolation from four-week-old seedlings. | NCBI | |
| GSM848963 | cotyledon | cultivar:Williams | Seeds were collected at different developmental stages.Cotyledons and seed coats were separated by dissecting whole seeds and then frozen in liquid nitrogen. | NCBI | |
| GSM848964 | seed,coat | cultivar:Williams | Seeds were collected at different developmental stages.Cotyledons and seed coats were separated by dissecting whole seeds and then frozen in liquid nitrogen. | NCBI | |
| GSM848965 | cotyledon | cultivar:Williams | Seeds were collected at different developmental stages.Cotyledons and seed coats were separated by dissecting whole seeds and then frozen in liquid nitrogen. | NCBI | |
| GSM848967 | cotyledon | cultivar:Williams | Seeds were collected at different developmental stages.Cotyledons and seed coats were separated by dissecting whole seeds and then frozen in liquid nitrogen. | NCBI | |
| GSM1419390 | leaves | line:IA3023 | Well watered | NCBI | |
| GSM1419391 | leaves | line:IA3023 | Drought stressed | NCBI | |
| GSM1419392 | leaves | line:LD003309 | Well watered | NCBI | |
| GSM1419393 | leaves | line:LD003309 | Drought stressed | NCBI |
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|---|
| GSM1008997 | hypocotyls | YZ1 | 7 days seedlings, 28'C in dark | NCBI | |
| GSM1008999 | embryogenic calli | YZ1 | 2 months after inducement, 28'C in light | NCBI | |
| GSM1061853 | Anthers | mixture of WT and GMS mutant | According to this sampling criterion and combined with microscopic examination, developing anthers at these three different growth stages were collected during early mornings. | NCBI | |
| GSM1709500 | leaves | SN-011 | Under non-saline conditions | NCBI | |
| GSM1709501 | leaves | SN-011 | Seedlings were treated with 150 mM solution of NaCl, under saline conditions for 4h | NCBI | |
| GSM1709502 | leaves | SN-011 | Seedlings were treated with 150 mM solution of NaCl, under saline conditions for 5d | NCBI |
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|---|
| GSM949160 | 1-5days post anthesis grains | Golden Promise | RNA was extracted using a phenol/chloroform based method from grain harvested on each day after anthesis and equal RNA amounts pooled to make 1-5, 6-10 and 11-15 day samples | NCBI | |
| GSM949161 | 6-10days post anthesis grains | Golden Promise | RNA was extracted using a phenol/chloroform based method from grain harvested on each day after anthesis and equal RNA amounts pooled to make 1-5, 6-10 and 11-15 day samples | NCBI | |
| GSM949162 | 11-15days post anthesis grains | Golden Promise | RNA was extracted using a phenol/chloroform based method from grain harvested on each day after anthesis and equal RNA amounts pooled to make 1-5, 6-10 and 11-15 day samples | NCBI |
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|---|
| GSM643816 | roots | ecotype:Jemalong A17 | Seedlings were grown in a sand: expanded clay substrate (1:1) under 16h light at 25'C and fertilized, unless otherwise noted, twice a week with half strengths Hoagland solution . For inoculation with Glomus intraradices, an inoculum was added to the substrate at 10% (v/v). G. intraradices (strain BB-E, provided by Agrauxine, Dijon, France) was used. | NCBI | |
| GSM643818 | roots | ecotype:Jemalong A17 | Seedlings were grown in a sand: expanded clay substrate (1:1) under 16h light at 25'C and fertilized, unless otherwise noted, twice a week with half strengths Hoagland solution . For inoculation with Glomus intraradices, an inoculum was added to the substrate at 10% (v/v). G. intraradices (strain BB-E, provided by Agrauxine, Dijon, France) was used. | NCBI | |
| GSM643817 | roots | ecotype:Jemalong A17 | Seedlings were grown in a sand: expanded clay substrate (1:1) under 16h light at 25'C and fertilized, unless otherwise noted, twice a week with half strengths Hoagland solution . For inoculation with Glomus intraradices, an inoculum was added to the substrate at 10% (v/v). G. intraradices (strain BB-E, provided by Agrauxine, Dijon, France) was used. | NCBI | |
| GSM769293 | flower | ecotype:A17A | NCBI |
| Name | Tissue | Genotype | Treatment | Details | Download |
|---|---|---|---|---|
| GSM476257 | young inflorescences(4-6cm) | wild-type | Trizol reagent (Invitrogen) | Fatal error: Uncaught Error: Undefined constant "link" in /home/www/html/DPMIND/degradome.php:489 Stack trace: #0 {main} thrown in /home/www/html/DPMIND/degradome.php on line 489 |