OSA-PHAS4327072


Function Link


Basic Info

Chr:

Chr1

Start:

5593929

End:

5599276

Strand:

-

Ref_name:

LOC4327072

Sequence
(XM_015765731.2):

GUGCCCUUUAAAUACUACCCACCACUAGGCUUCUCUCCCCUUCUACUUCUCUCUGCCCCCCCUCUCUCUCCUCCCCCUCAAUCGCGGCGCGGGUAGAUUCGCGGCGGCCGGAGCGGAGCGGAGCGCAUCCAUGGCGGUCGUCGCCGGUUUCUCCAUCAGGGAGUACACGGCGAGCAUGAGGGGAGCGGCGGGGGCGGAGGGGAGGAGGCUGUACGGCCUCGGCGCUGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCGGACGAGCUGGCCGCGGCGCCGCCCCUUCCUCCCCGGUCGCCGUCCCCGUCCCCGUCCCCGCCGCCGCCGCCGCCGACGAAGCCGUCGAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACGAUGACGACGACGACGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGCGGCGGGGGCUGCUUCUGCUCCGGUGGCGGCGGCGGCGGCGGCGGCGGAGACGCGUGAUUCCGAGGGAAACUUCACCAGAAAGGAAGCACAUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGGGCUACCAAUAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAAGCACACAUCCGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCAGUGAAGCGUGUAAAAUUCUCAGAAGUUAAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAGCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAAGGAGGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGAACUUGCUGAGUCUCAUGGUGAUUGUAGUAGUGGUUCGGUUAAAGAUGCUAUGACAAAGGGGAAGUCACCUUGUGCAUUGCCCAAUCAUACAGUUCAGGACUCAUUUCAGCAGCACCAGAGGUAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGUCAGCCCUCCAAUGAAGGGGAAGUUCCUCCCCAAGACUGUAAUGCAUCUGCCGGAGCGGCUUCAAGUUCUCAUGCUGAAAUGGGUGUGCAGCAGGGGUGUAGGCCUGCUCCAGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUUGCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUCCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCACAGAAUUUGAGCCACUCAUUCCCCAUGGCCAAUGCAUUAUCUGGAGAUCGAUUGCAAUACGACGAUCGGUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCACUUACAAGUCAUGGCAGUGCAGCGCUCCGUCAGAAUUUGCCGUAUGUUUGGAGCCGUUACUCUGAUCCUUCUUCAUCCAGUACUGCAUCACCCUCAGCACCAAUUUUGCCUACGACGGCACAGCAUGUGACACCAUCUUCAGUUUAUCAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCGUCGGUUCACCCCCACAACUCUCCAAGCUUUACAUUCACUCGUCCAAGACGGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCCUAGCUCUUCCUCUGGUGGCCGGCAUGCGCGAAGAACUGGUCCGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCUUGUGUUUCUUUCGGAAGUAAGAGUGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCUGGGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGACAUGUUUUUCCUGAGCUGUUGAGGAGGAGUAAGCUGUAGGUUGAAGGUAUGUUAGUUUCUCUCUGUAUGUGUUCAGCAAUCAGCACACAUUUGUUAAUCUUGACUUGUGGUGUUCGAGAAACCACCCCUGAUUUCUUAACAUUUGGUACAAGCCAAUUAAUUAAAAACAUAUUAUAAAA

Sequence
(XR_001542424.2):

GUGCCCUUUAAAUACUACCCACCACUAGGCUUCUCUCCCCUUCUACUUCUCUCUGCCCCCCCUCUCUCUCCUCCCCCUCAAUCGCGGCGCGGGUAGAUUCGCGGCGGCCGGAGCGGAGCGGAGCGCAUCCAUGGCGGUCGUCGCCGGUUUCUCCAUCAGGGAGUACACGGCGAGCAUGAGGGGAGCGGCGGGGGCGGAGGGGAGGAGGCUGUACGGCCUCGGCGCUGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCGGACGAGCUGGCCGCGGCGCCGCCCCUUCCUCCCCGGUCGCCGUCCCCGUCCCCGUCCCCGCCGCCGCCGCCGCCGACGAAGCCGUCGAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACGAUGACGACGACGACGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGCGGCGGGGGCUGCUUCUGCUCCGGUGGCGGCGGCGGCGGCGGCGGCGGAGACGCGUGAUUCCGAGGGAAACUUCACCAGAAAGGAAGCACAUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGGGCUACCAAUAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAAGCACACAUCCGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCAGUGAAGCGUGUAAAAUUCUCAGAAGUUAAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAGCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAAGGAGGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGAACUUGCUGAGUCUCAUGGUGAUUGUAGUAGUGGUUCGGUUAAAGAUGCUAUGACAAAGGGGAAGUCACCUUGUGCAUUGCCCAAUCAUACAGUUCAGGACUCAUUUCAGCAGCACCAGAGGUAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGUCAGCCCUCCAAUGAAGGGGAAGUUCCUCCCCAAGACUGUAAUGCAUCUGCCGGAGCGGCUUCAAGUUCUCAUGCUGAAAUGGGUGUGCAGCAGGGGUGUAGGCCUGCUCCAGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUUGCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUCCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCACAGAAUUUGAGCCACUCAUUCCCCAUGGCCAAUGCAUUAUCUGGAGAUCGAUUGCAAUACGACGAUCGGUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCACUUACAAGUCAUGGCAGUGCAGCGCUCCGUCAGAAUUUGCCGUAUGUUUGGAGCCGUUACUCUGAUCCUUCUUCAUCCAGUACUGCAUCACCCUCAGCACCAAUUUUGCCUACGACGGCACAGCAUGUGACACCAUCUUCAGUUUAUCAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCGUCGGUUCACCCCCACAACUCUCCAAGCUUUACAUUCACUCGUCCAAGACGGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCCUAGCUCUUCCUCUGGUGGCCGGCAUGCGCGAAGAACUGGUCCGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCUUGUGUUUCUUUCGGAAGUAAGAGUGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCUGGGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGACAUGUUUUUCCUGAGCUGUUGAGGAGGAGUAAGCUGUAGGUUGAAGGGCAAAAAAAGAAUUGACUUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

1

LEP:

0.2%

ME_num:

228

MEP:

46.34%

HE_num:

262

HEP:

53.25%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.67

Avg Expression:

55.80

Tip: OSA-PHAS4327072 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"1.316157114025563.45746630797165e-24