Chr:
Chr1
Start:
5593929
End:
5599276
Strand:
-
Ref_name:
LOC4327072
Sequence
(XM_015765731.2):
GUGCCCUUUAAAUACUACCCACCACUAGGCUUCUCUCCCCUUCUACUUCUCUCUGCCCCCCCUCUCUCUCCUCCCCCUCAAUCGCGGCGCGGGUAGAUUCGCGGCGGCCGGAGCGGAGCGGAGCGCAUCCAUGGCGGUCGUCGCCGGUUUCUCCAUCAGGGAGUACACGGCGAGCAUGAGGGGAGCGGCGGGGGCGGAGGGGAGGAGGCUGUACGGCCUCGGCGCUGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCGGACGAGCUGGCCGCGGCGCCGCCCCUUCCUCCCCGGUCGCCGUCCCCGUCCCCGUCCCCGCCGCCGCCGCCGCCGACGAAGCCGUCGAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACGAUGACGACGACGACGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGCGGCGGGGGCUGCUUCUGCUCCGGUGGCGGCGGCGGCGGCGGCGGCGGAGACGCGUGAUUCCGAGGGAAACUUCACCAGAAAGGAAGCACAUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGGGCUACCAAUAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAAGCACACAUCCGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCAGUGAAGCGUGUAAAAUUCUCAGAAGUUAAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAGCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAAGGAGGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGAACUUGCUGAGUCUCAUGGUGAUUGUAGUAGUGGUUCGGUUAAAGAUGCUAUGACAAAGGGGAAGUCACCUUGUGCAUUGCCCAAUCAUACAGUUCAGGACUCAUUUCAGCAGCACCAGAGGUAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGUCAGCCCUCCAAUGAAGGGGAAGUUCCUCCCCAAGACUGUAAUGCAUCUGCCGGAGCGGCUUCAAGUUCUCAUGCUGAAAUGGGUGUGCAGCAGGGGUGUAGGCCUGCUCCAGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUUGCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUCCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCACAGAAUUUGAGCCACUCAUUCCCCAUGGCCAAUGCAUUAUCUGGAGAUCGAUUGCAAUACGACGAUCGGUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCACUUACAAGUCAUGGCAGUGCAGCGCUCCGUCAGAAUUUGCCGUAUGUUUGGAGCCGUUACUCUGAUCCUUCUUCAUCCAGUACUGCAUCACCCUCAGCACCAAUUUUGCCUACGACGGCACAGCAUGUGACACCAUCUUCAGUUUAUCAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCGUCGGUUCACCCCCACAACUCUCCAAGCUUUACAUUCACUCGUCCAAGACGGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCCUAGCUCUUCCUCUGGUGGCCGGCAUGCGCGAAGAACUGGUCCGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCUUGUGUUUCUUUCGGAAGUAAGAGUGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCUGGGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGACAUGUUUUUCCUGAGCUGUUGAGGAGGAGUAAGCUGUAGGUUGAAGGUAUGUUAGUUUCUCUCUGUAUGUGUUCAGCAAUCAGCACACAUUUGUUAAUCUUGACUUGUGGUGUUCGAGAAACCACCCCUGAUUUCUUAACAUUUGGUACAAGCCAAUUAAUUAAAAACAUAUUAUAAAA
Sequence
(XR_001542424.2):
GUGCCCUUUAAAUACUACCCACCACUAGGCUUCUCUCCCCUUCUACUUCUCUCUGCCCCCCCUCUCUCUCCUCCCCCUCAAUCGCGGCGCGGGUAGAUUCGCGGCGGCCGGAGCGGAGCGGAGCGCAUCCAUGGCGGUCGUCGCCGGUUUCUCCAUCAGGGAGUACACGGCGAGCAUGAGGGGAGCGGCGGGGGCGGAGGGGAGGAGGCUGUACGGCCUCGGCGCUGGGGAUCUGCCGCCGAUGGAGGCGAGGAGGUUCCGGUGGUGGGCGGACGAGCUGGCCGCGGCGCCGCCCCUUCCUCCCCGGUCGCCGUCCCCGUCCCCGUCCCCGCCGCCGCCGCCGCCGACGAAGCCGUCGAGGAGGACGCUGGGGAAGGCGAGGGCGCCGAAGAAGCGGUCCAUAUCGGAUCUGUUCGCGGCGGCGCCUCCCCUCGCGCUUCCCUCCUCCGAUUCGGGCGGCGGCGGGAACGACGAUGACGACGACGACGAGGCGCUCUGCGCGAUCAUGCGGCGAGCUAGGGAGAAGAAGCGGAAGCGGAGGCUGCAGGAGGAGGCGGCGGGGGCUGCUUCUGCUCCGGUGGCGGCGGCGGCGGCGGCGGCGGAGACGCGUGAUUCCGAGGGAAACUUCACCAGAAAGGAAGCACAUGACAAGACAAAUUUGCCUGGUGGAUUGGAUACUCCUCAAGCGUCAAGGAGACCUGAUGGUGUACACCAUGCAAGAACAGACGAGGAAAGGUCUCCAGACUCAAAGAGAAGGAAGAAGGUAAAGAUCACUAACUUAGAUAAGAACAACAACAAGAAGAUUGAUAAGAAAAGGUACAGCGAGAGUAAAAGGGCUACCAAUAAGGUGGGGAAACAGCAUGACCUGAAGAAAAUGCUCCCUUUGCAUAGUAUUCUGAAGAAAUACACAAAGCACACAUCCGUCAAAAUGGUCAAGGAGAAACAUGGCGACCCAAAAGGCACAGAAGUCAUUGAAGUCUGCCGCAAAUCAGUGAAGCGUGUAAAAUUCUCAGAAGUUAAUGAUGUGCUUGGUAUUAACAAGCAAAAUAUCUGCAAGCUGUUCUCGGAUGCUUUGGCGUCAUCGUCGUCAUCAUCCACGGACAUGUCCAGUGAAGGGGACAAGCACAUAGCUGCAGAAAGCUGUAGUUCUCAUAUGCCGGAGACAGCAACUAAAGAAGCAAGCAAGAGUACAGAUCAUGAGGAUUCUCUUGAGCUCACCAGCACACAGUUGUCCUCCAAUUUGUUUGAUCUGAAUGAGGCACUGCCAGAAUCUACUGAUUUGAACUACCCAUAUGUGUCAAAUCCAGAGGAGCCAAAUCAUGAGCCUAGACAGCAUGAGCCUUUAGACUCUGAUGUGCAAGUUAUUGACGAAGGAGGACAAAACCAGCAGGAUCUGUCUUUGGAUUCACAUGGACUUCAAUGUCAGUCCGUUCCUGAGUCUGGGUUAGAAAGAGCUAGAAGUUCAAUAUCGCCAGGCACAUUUUUGCACGGUGAGUUCAUGGAAGUGUCUGACACAUUUUUUGUUGGUUCUUCACGGAAGUUGACAGAACUUGCUGAGUCUCAUGGUGAUUGUAGUAGUGGUUCGGUUAAAGAUGCUAUGACAAAGGGGAAGUCACCUUGUGCAUUGCCCAAUCAUACAGUUCAGGACUCAUUUCAGCAGCACCAGAGGUAUUAUGCCUUCAAUCUGAAUCUUGGAGGCAGUCAGCCCUCCAAUGAAGGGGAAGUUCCUCCCCAAGACUGUAAUGCAUCUGCCGGAGCGGCUUCAAGUUCUCAUGCUGAAAUGGGUGUGCAGCAGGGGUGUAGGCCUGCUCCAGGACAAACUGUGCGUCUAAUGGGCAAAGAUCUUGCAGUAUCUACAACCAGAGGAGAGUAUGUGUCUGGGACACAUUCCUAUACUGAAGACCAUCCCACAAAGUUGUUCUUGGAAUUGCCGCGACAAGGACGGCCUUAUCUCUCUUUACAAGCUCAAAGUGUGCCCAAUGUUUCAGCAAAUUCUGCAAGCCCAAGUCAAUCACAUAUCAGGUACACUGCCCCACAGAAUUUGAGCCACUCAUUCCCCAUGGCCAAUGCAUUAUCUGGAGAUCGAUUGCAAUACGACGAUCGGUUCAGCUACUUGUCAGGCUCACAGCACCAUGGAAAUGUUCUGCUGGGGAGUCCAUCACUUACAAGUCAUGGCAGUGCAGCGCUCCGUCAGAAUUUGCCGUAUGUUUGGAGCCGUUACUCUGAUCCUUCUUCAUCCAGUACUGCAUCACCCUCAGCACCAAUUUUGCCUACGACGGCACAGCAUGUGACACCAUCUUCAGUUUAUCAUGCUAAUUUGCCUCGGUCAUAUGGUGUGGUCUCAGCUGGAUCGUCGGUUCACCCCCACAACUCUCCAAGCUUUACAUUCACUCGUCCAAGACGGAUAGUUGAAGAAGCUUCUGGCAGCAGAAGAGAUGCAGCAUGUCCAUCUAGAAAUGCAGAAAAUGUUGCUGCAAGAGCUGCCAUUCCUGAAAUGCCUAGCUCUUCCUCUGGUGGCCGGCAUGCGCGAAGAACUGGUCCGAUGAAGCUCACUCCUGGGGCCAAGCAUAUCCUGAUGCCGAGUGACACCACAGGGGACGGCACCUCCAUGCCAGUGUACUCUUGUGUUUCUUUCGGAAGUAAGAGUGGAAAUGCUUCAGCAACUCGCAACAUGGGAGCUGGGCUGUACAAGUUAUAGUCCAAAUAAUGCUUAAACUUGGACAUGUUUUUCCUGAGCUGUUGAGGAGGAGUAAGCUGUAGGUUGAAGGGCAAAAAAAGAAUUGACUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
46.34%
HE_num:
HEP:
53.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.67
Avg Expression:
55.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.31615711402556 | 3.45746630797165e-24 |